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COL13A1 collagen type XIII alpha 1 chain [ Bos taurus (cattle) ]

Gene ID: 613849, updated on 5-Mar-2024

Summary

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Official Symbol
COL13A1provided by VGNC
Official Full Name
collagen type XIII alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:27555
See related
Ensembl:ENSBTAG00000011741
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 28 NC_037355.1 (26095666..26248051)

Chromosome 28 - NC_037355.1Genomic Context describing neighboring genes Neighboring gene neurogenin 3 Neighboring gene family with sequence similarity 241 member B Neighboring gene macroH2A.2 histone Neighboring gene HIG1 domain family member 1A, mitochondrial-like Neighboring gene apoptosis inducing factor mitochondria associated 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037355.1 Chromosome 28 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC166094

General protein information

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Preferred Names
collagen alpha-1(XIII) chain
Names
collagen, type XIII, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105433.1 → NP_001098903.1  collagen alpha-1(XIII) chain

    See identical proteins and their annotated locations for NP_001098903.1

    Status: PROVISIONAL

    Source sequence(s)
    BC150091
    UniProtKB/TrEMBL
    A7YY40
    Related
    ENSBTAP00000039599.6, ENSBTAT00000039811.6
    Conserved Domains (1) summary
    pfam01391
    Location:478 → 537
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037355.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26095666..26248051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059882598.1 → XP_059738581.1  collagen alpha-1(XIII) chain isoform X6

  2. XM_059882596.1 → XP_059738579.1  collagen alpha-1(XIII) chain isoform X4

  3. XM_059882593.1 → XP_059738576.1  collagen alpha-1(XIII) chain isoform X1

  4. XM_059882595.1 → XP_059738578.1  collagen alpha-1(XIII) chain isoform X3

  5. XM_059882594.1 → XP_059738577.1  collagen alpha-1(XIII) chain isoform X2

  6. XM_059882597.1 → XP_059738580.1  collagen alpha-1(XIII) chain isoform X5

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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