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C1D C1D nuclear receptor corepressor [ Canis lupus familiaris (dog) ]

Gene ID: 612549, updated on 5-Mar-2024

Summary

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Official Symbol
C1Dprovided by VGNC
Official Full Name
C1D nuclear receptor corepressorprovided by VGNC
Primary source
VGNC:VGNC:38573
See related
Ensembl:ENSCAFG00845022766
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (68179369..68198391, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (67051418..67070335, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (68457170..68476182, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (67863984..67882959, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (68161261..68180266, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106559424 Neighboring gene 60S ribosomal protein L17-like Neighboring gene uncharacterized LOC106559437 Neighboring gene uncharacterized LOC111097804 Neighboring gene dynein axonemal assembly factor 10 Neighboring gene partner of NOB1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    68179369..68198391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680797.1 → XP_038536725.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A8C0QF80, A0A8C0R8T3, A0A8C0RYV5, A0A8I3PJR3
    Related
    ENSCAFP00845031474.1, ENSCAFT00845040185.1
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    67863984..67882959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489482.1 → XP_038345410.1  nuclear nucleic acid-binding protein C1D

    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    68161261..68180266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615407.1 → XP_038471335.1  nuclear nucleic acid-binding protein C1D

    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    68457170..68476182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551471.1 → XP_038407399.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A8C0QF80, A0A8C0R8T3, A0A8C0RYV5, A0A8I3PJR3
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    67051418..67070335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038650185.1 → XP_038506113.1  nuclear nucleic acid-binding protein C1D

    UniProtKB/TrEMBL
    A0A8C0QF80, A0A8C0R8T3, A0A8C0RYV5, A0A8I3PJR3
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 96
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
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