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ELP1 elongator acetyltransferase complex subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 612455, updated on 5-Mar-2024

Summary

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Official Symbol
ELP1provided by VGNC
Official Full Name
elongator acetyltransferase complex subunit 1provided by VGNC
Primary source
VGNC:VGNC:40326
See related
Ensembl:ENSCAFG00845011728
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
IKBKAP
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
39
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (65169787..65228593, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (62437897..62496433, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (64402753..64461318, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (63690982..63749074, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (63709775..63768691, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene actin like 7B Neighboring gene actin like 7A Neighboring gene uncharacterized LOC111098125 Neighboring gene actin binding transcription modulator Neighboring gene catenin alpha like 1 Neighboring gene uncharacterized LOC111098126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of elongator holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongator complex protein 1; LOW QUALITY PROTEIN: elongator complex protein 1
Names
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    65169787..65228593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038682374.1 → XP_038538302.1  elongator complex protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NJ37, A0A8C0QNG0, A0A8I3NEL8
    Related
    ENSCAFP00845016390.1, ENSCAFT00845020871.1
    Conserved Domains (3) summary
    COG0457
    Location:875 → 1097
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:112 → 145
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:1 → 954
    IKI3; IKI3 family

  2. XM_038682373.1 → XP_038538301.1  elongator complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNG0
    Conserved Domains (3) summary
    COG0457
    Location:880 → 1102
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:117 → 150
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:6 → 959
    IKI3; IKI3 family

RNA

  1. XR_005434949.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    63690982..63749074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490911.1 → XP_038346839.1  LOW QUALITY PROTEIN: elongator complex protein 1 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    63709775..63768691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038616918.1 → XP_038472846.1  elongator complex protein 1 isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:875 → 1097
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:112 → 145
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:1 → 954
    IKI3; IKI3 family

  2. XM_038616917.1 → XP_038472845.1  elongator complex protein 1 isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:880 → 1102
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:117 → 150
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:6 → 959
    IKI3; IKI3 family

RNA

  1. XR_005401575.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    64402753..64461318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038553037.1 → XP_038408965.1  elongator complex protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NJ37, A0A8C0QNG0, A0A8I3NEL8
    Conserved Domains (3) summary
    COG0457
    Location:875 → 1097
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:112 → 145
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:1 → 954
    IKI3; IKI3 family

  2. XM_038553036.1 → XP_038408964.1  elongator complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNG0
    Conserved Domains (3) summary
    COG0457
    Location:880 → 1102
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:117 → 150
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:6 → 959
    IKI3; IKI3 family

RNA

  1. XR_005367131.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    62437897..62496433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_850184.6 → XP_855277.3  elongator complex protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0NJ37, A0A8C0QNG0, A0A8I3NEL8
    Conserved Domains (3) summary
    COG0457
    Location:875 → 1097
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:112 → 145
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:1 → 954
    IKI3; IKI3 family

  2. XM_005626902.4 → XP_005626959.2  elongator complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0QNG0
    Conserved Domains (3) summary
    COG0457
    Location:880 → 1102
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00039
    Location:117 → 150
    7WD40; WD40 repeat [structural motif]
    pfam04762
    Location:6 → 959
    IKI3; IKI3 family

RNA

  1. XR_005421866.1 RNA Sequence

Nucleotide Protein
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