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PUDP pseudouridine 5'-phosphatase [ Canis lupus familiaris (dog) ]

Gene ID: 610678, updated on 5-Mar-2024

Summary

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Official Symbol
PUDPprovided by VGNC
Official Full Name
pseudouridine 5'-phosphataseprovided by VGNC
Primary source
VGNC:VGNC:45205
See related
Ensembl:ENSCAFG00845025128
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
HDHD1; HDHD1A
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (4130143..4263514, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (4150457..4281638, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (4160572..4292305, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (4128167..4261408, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (4159884..4294154, complement)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene neuroligin 4 X-linked Neighboring gene uncharacterized LOC119868353 Neighboring gene uncharacterized LOC102152007 Neighboring gene uncharacterized LOC102152065 Neighboring gene uncharacterized LOC119868355 Neighboring gene basic salivary proline-rich protein 1-like Neighboring gene U2 spliceosomal RNA Neighboring gene steroid sulfatase Neighboring gene uncharacterized LOC111094878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pseudouridine-5'-phosphatase
Names
haloacid dehalogenase-like hydrolase domain containing 1
haloacid dehalogenase-like hydrolase domain containing 1A
XP_038305265.1
XP_038305266.1
XP_038305267.1
XP_038320911.1
XP_038320912.1
XP_038378697.1
XP_038378698.1
XP_038378699.1
XP_038442691.1
XP_038442692.1
XP_038442693.1
XP_038507197.1
XP_038507198.1
XP_038507199.1
XP_853313.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    4130143..4263514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038449337.1 → XP_038305265.1  pseudouridine-5'-phosphatase isoform X1

    UniProtKB/TrEMBL
    A0A8C0YXN0
    Conserved Domains (1) summary
    cl21460
    Location:12 → 169
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_038449339.1 → XP_038305267.1  pseudouridine-5'-phosphatase isoform X3

    UniProtKB/TrEMBL
    A0A8C0YXN0
    Conserved Domains (1) summary
    cl21460
    Location:9 → 154
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_038449338.1 → XP_038305266.1  pseudouridine-5'-phosphatase isoform X2

    UniProtKB/TrEMBL
    A0A8C0QTQ4, A0A8I3PJR7
    Related
    ENSCAFP00845034749.1, ENSCAFT00845044345.1
    Conserved Domains (1) summary
    cd07529
    Location:12 → 199
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    4128167..4261408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038522769.1 → XP_038378697.1  pseudouridine-5'-phosphatase isoform X1

    Conserved Domains (1) summary
    cl21460
    Location:12 → 169
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_038522771.1 → XP_038378699.1  pseudouridine-5'-phosphatase isoform X3

    Conserved Domains (1) summary
    cl21460
    Location:9 → 154
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_038522770.1 → XP_038378698.1  pseudouridine-5'-phosphatase isoform X2

    Conserved Domains (1) summary
    cd07529
    Location:12 → 199
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    4159884..4294154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038651269.1 → XP_038507197.1  pseudouridine-5'-phosphatase isoform X1

  2. XM_038651271.1 → XP_038507199.1  pseudouridine-5'-phosphatase isoform X3

  3. XM_038651270.1 → XP_038507198.1  pseudouridine-5'-phosphatase isoform X2

    Conserved Domains (1) summary
    cd07529
    Location:12 → 199
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    4160572..4292305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038586764.1 → XP_038442692.1  pseudouridine-5'-phosphatase isoform X4

    UniProtKB/TrEMBL
    A0A8C0YXN0

  2. XM_038586763.1 → XP_038442691.1  pseudouridine-5'-phosphatase isoform X2

    UniProtKB/TrEMBL
    A0A8C0QTQ4, A0A8I3PJR7
    Conserved Domains (1) summary
    cd07529
    Location:12 → 199
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2

  3. XM_038586765.1 → XP_038442693.1  pseudouridine-5'-phosphatase isoform X5

    UniProtKB/TrEMBL
    A0A8C0QTQ4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    4150457..4281638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038464983.1 → XP_038320911.1  pseudouridine-5'-phosphatase isoform X6

    UniProtKB/TrEMBL
    A0A8C0YXN0
    Conserved Domains (1) summary
    cl21460
    Location:12 → 169
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_038464984.1 → XP_038320912.1  pseudouridine-5'-phosphatase isoform X7

    UniProtKB/TrEMBL
    A0A8C0YXN0
    Conserved Domains (1) summary
    cl21460
    Location:9 → 154
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  3. XM_848220.4 → XP_853313.2  pseudouridine-5'-phosphatase isoform X2

    UniProtKB/TrEMBL
    A0A8C0JK19, A0A8C0QTQ4, A0A8C0SHC0, A0A8P0NDF9
    Conserved Domains (1) summary
    cd07529
    Location:12 → 199
    HAD_AtGPP-like; subfamily of beta-phosphoglucomutase-like family, similar to Arabidopsis thaliana Gpp1 and Gpp2
Nucleotide Protein
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