Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    RORA RAR-related orphan receptor A [ Homo sapiens (human) ]

    Gene ID: 6095, updated on 11-May-2013
    Official Symbol
    RORAprovided by HGNC
    Official Full Name
    RAR-related orphan receptor Aprovided by HGNC
    Primary source
    HGNC:10258
    See related
    Ensembl:ENSG00000069667; HPRD:02896; MIM:600825; Vega:OTTHUMG00000132769
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ROR1; ROR2; ROR3; RZRA; NR1F1; RZR-ALPHA
    Summary
    The protein encoded by this gene is a member of the NR1 subfamily of nuclear hormone receptors. It can bind as a monomer or as a homodimer to hormone response elements upstream of several genes to enhance the expression of those genes. The specific functions of this protein are not known, but it has been shown to interact with NM23-2, a nucleoside diphosphate kinase involved in organogenesis and differentiation, as well as with NM23-1, the product of a tumor metastasis suppressor candidate gene. Four transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jul 2008]
    Location :
    15q22.2
    Sequence :
    Chromosome: 15; NC_000015.9 (60780483..61521502, complement)
    See RORA in Epigenomics, MapViewer

    Chromosome 15 - NC_000015.9Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 pseudogene 22 Neighboring gene NMDA receptor regulated 2 Neighboring gene cytochrome c, somatic pseudogene 38 Neighboring gene uncharacterized LOC100506530 Neighboring gene vacuolar protein sorting 13 homolog C (S. cerevisiae)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    P35398 Q92905 COPS5    HPRD  PubMed  
    P35398 Q09472 EP300    HPRD  PubMed  
    P35398 Q8TAP4 LMO3    HPRD  PubMed  
    P35398 Q15648 MED1    HPRD  PubMed  
    P35398 P15172 MYOD1    HPRD  PubMed  
    P35398 Q15596 NCOA2    HPRD  PubMed  
    P35398 P15531 NME1    HPRD  PubMed  
    P35398 P22392 NME2    HPRD  PubMed  
    P35398 P51843 NR0B1    HPRD  PubMed  
    P35398 Q12796 PNRC1    HPRD  PubMed  
    P35398 Q9NPJ4 PNRC2    HPRD  PubMed  
    P35398 Q92786 PROX1    HPRD  PubMed  
    P35398 P62195 PSMC5    HPRD  PubMed  
    P35398 P35398 RORA    HPRD  PubMed  
    P35398 Q6STE5 SMARCD3    HPRD  PubMed  
    P35398 ZXD family zinc finger C ZXDC    HPRD  PubMed  
    BioGRID:112022 BioGRID:107480 CEBPB    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112022 BioGRID:116183 COPS5    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:108009 DDB1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112022 BioGRID:114217 EIF3I    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:108347 EP300    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:112022 BioGRID:108446 EZH2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112022 BioGRID:119613 HDAC7    BioGRID  PubMed Positive Genetic 
    BioGRID:112022 BioGRID:120977 LMO3    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:120905 LRIF1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:112022 BioGRID:110737 MYOD1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:112022 BioGRID:114200 NCOA1    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:110894 NME1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:112022 BioGRID:106695 NR0B1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:112022 BioGRID:116157 PNRC1    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:120768 PNRC2    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:111613 PROX1    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:111678 PSMC5    BioGRID  PubMed Two-hybrid 
    BioGRID:112022 BioGRID:111697 PTBP1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112022 BioGRID:114166 RUVBL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112022 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:112022 BioGRID:115079 VPRBP    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:112022 BioGRID:122653 ZXDC    BioGRID  PubMed Two-hybrid 
    • Adipogenesis, organism-specific biosystem (from WikiPathways)
      Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...
    • BMAL1:CLOCK/NPAS2 Activates Circadian Expression, organism-specific biosystem (from REACTOME)
      BMAL1:CLOCK/NPAS2 Activates Circadian Expression, organism-specific biosystemAs inferred from mouse, BMAL1:CLOCK and BMAL1:NPAS2 heterodimers bind to sequence elements (E boxes) in the promoters of target genes and enhance transcription (Gekakis et al. 1998, reviewed in Munoz...
    • Circadian Clock, organism-specific biosystem (from REACTOME)
      Circadian Clock, organism-specific biosystemAt the center of the mammalian circadian clock is a negative transcription/translation-based feedback loop: The BMAL1:CLOCK/NPAS2 heterodimer transactivates CRY and PER genes by binding E-box element...
    • Circadian Repression of Expression by REV-ERBA, organism-specific biosystem (from REACTOME)
      Circadian Repression of Expression by REV-ERBA, organism-specific biosystemREV-ERBA binds DNA elements very similar to those bound by the transcription activator RORA. RORAREV-ERBA bound to DNA and heme recruits the corepressors NCoR and HDAC3 to repress transcription. Thu...
    • Circadian rhythm, organism-specific biosystem (from KEGG)
      Circadian rhythm, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Circadian rhythm, conserved biosystem (from KEGG)
      Circadian rhythm, conserved biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Fatty acid, triacylglycerol, and ketone body metabolism, organism-specific biosystem (from REACTOME)
      Fatty acid, triacylglycerol, and ketone body metabolism, organism-specific biosystemThe reactions involved in the metabolism of fatty acids and of the triacylglycerols and ketone bodies derived from them form a closely interrelated, coordinately regulated module that plays a central...
    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
      Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...
    • Metabolism, organism-specific biosystem (from REACTOME)
      Metabolism, organism-specific biosystemMetabolic processes in human cells generate energy through the oxidation of molecules consumed in the diet and mediate the synthesis of diverse essential molecules not taken in the diet as well as th...
    • Metabolism of lipids and lipoproteins, organism-specific biosystem (from REACTOME)
      Metabolism of lipids and lipoproteins, organism-specific biosystemLipids are hydrophobic but otherwise chemically diverse molecules that play a wide variety of roles in human biology. They include ketone bodies, fatty acids, triacylglycerols, phospholipids and sphi...
    • Nuclear Receptor transcription pathway, organism-specific biosystem (from REACTOME)
      Nuclear Receptor transcription pathway, organism-specific biosystemA classic example of bifunctional transcription factors is the family of Nuclear Receptor (NR) proteins. These are DNA-binding transcription factors that bind certain hormones, vitamins, and other s...
    • Nuclear Receptors, organism-specific biosystem (from WikiPathways)
      Nuclear Receptors, organism-specific biosystemNuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of steroid and thyroid hormones and certain other molecules. In response, th...
    • PPARA Activates Gene Expression, organism-specific biosystem (from REACTOME)
      PPARA Activates Gene Expression, organism-specific biosystemThe set of genes regulated by PPAR-alpha is not fully known in humans, however many examples have been found in mice. Genes directly activated by PPAR-alpha contain peroxisome proliferator receptor e...
    • RORA Activates Circadian Expression, organism-specific biosystem (from REACTOME)
      RORA Activates Circadian Expression, organism-specific biosystemAs inferred from mouse, RORA binds ROR elements (ROREs) in DNA and recruits the coactivators PPARGC1A (PGC-1alpha) and p300 (EP300, a histone acetylase) to activate transcription.
    • Regulation of Lipid Metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha), organism-specific biosystem (from REACTOME)
      Regulation of Lipid Metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha), organism-specific biosystemPeroxisome proliferator-activated receptor alpha (PPAR-alpha) is the major regulator of fatty acid oxidation in the liver. PPARalpha is also the target of fibrate drugs used to treat abnormal plasma ...
    • SIDS Susceptibility Pathways, organism-specific biosystem (from WikiPathways)
      SIDS Susceptibility Pathways, organism-specific biosystemIn this model, we provide an integrated view of Sudden Infant Death Syndrome (SIDS) at the level of implicated tissues, signaling networks and genetics. The purpose of this model is to serve as an ov...

    Markers

    Homology

    Clone Names

    • MGC119326, MGC119329, DKFZp686M2414

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cGMP metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    cerebellar Purkinje cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    gene expression TAS
    Traceable Author Statement
    more info
     
    intracellular receptor signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    nitric oxide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of macrophage activation IEA
    Inferred from Electronic Annotation
    more info
     
    signal transduction NAS
    Non-traceable Author Statement
    more info
    PubMed 
    transcription initiation from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    nuclear receptor ROR-alpha
    Names
    nuclear receptor ROR-alpha
    ROR-alpha
    nuclear receptor RZR-alpha
    transcription factor RZR-alpha
    retinoid-related orphan receptor alpha
    nuclear receptor subfamily 1 group F member 1
    thyroid hormone nuclear receptor alpha variant 4
    retinoic acid receptor-related orphan receptor alpha

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029246.1 RefSeqGene

      Range
      5001..746020
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_002943.3NP_002934.1  nuclear receptor ROR-alpha isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3), also called RORalpha3, contains a different 5' sequence as compared to variant 1. As a result, variant 3 encodes isoform c, whose 91 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
      Source sequence(s)
      AC087385, DB482516, U04899
      Consensus CDS
      CCDS10178.1
      UniProtKB/Swiss-Prot
      P35398
      Conserved Domains (2) summary
      cd06939
      Location:296536
      Blast Score: 1161
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:91185
      Blast Score: 544
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    2. NM_134260.2NP_599022.1  nuclear receptor ROR-alpha isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2), also called RORalpha2, contains a different 5' sequence as compared to variant 1. As a result, variant 2 encodes isoform b, whose 99 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
      Source sequence(s)
      AC087385, DB482516, U04898
      Consensus CDS
      CCDS10179.1
      UniProtKB/Swiss-Prot
      P35398
      Conserved Domains (2) summary
      cd06939
      Location:304544
      Blast Score: 1165
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:99193
      Blast Score: 536
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    3. NM_134261.2NP_599023.1  nuclear receptor ROR-alpha isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1), also called RORalpha1, utilizes a different 5' exon than the other variants and encodes isoform a.
      Source sequence(s)
      AC087385, AC107905, U04897
      Consensus CDS
      CCDS10177.1
      UniProtKB/Swiss-Prot
      P35398
      Related
      ENSP00000335087, OTTHUMP00000163657, ENST00000335670, OTTHUMT00000256142
      Conserved Domains (2) summary
      cd06939
      Location:271511
      Blast Score: 1158
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:66160
      Blast Score: 532
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    4. NM_134262.2NP_599024.1  nuclear receptor ROR-alpha isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4), also called RZR-alpha, contains a different 5' sequence as compared to variant 1. As a result, variant 4 encodes isoform d, whose 11 N-terminal aa differ from the 66 N-terminal aa of isoform a encoded by variant 1.
      Source sequence(s)
      AC087385, AL532048, BC100990, U04899
      Consensus CDS
      CCDS45271.1
      UniProtKB/Swiss-Prot
      P35398
      Conserved Domains (2) summary
      cd06939
      Location:216456
      Blast Score: 1149
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:11105
      Blast Score: 538
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000015.9 Reference GRCh37.p10 Primary Assembly

      Range
      60780483..61521502, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000147.1 Alternate HuRef

      Range
      37602935..37793081, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018926.1 Alternate CHM1_1.0

      Range
      40842134..41583227, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...