CSF2RA colony stimulating factor 2 receptor subunit alpha [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: CSF2RAprovided by VGNC
Official Full Name: colony stimulating factor 2 receptor subunit alphaprovided by VGNC
Primary source: VGNC:VGNC:39655
See related: Ensembl:ENSCAFG00845021143
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human all
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Genomic context

Location:: chromosome: X

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	X	NC_051843.1 (742740..766122)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	X	NC_006621.4 (772774..796202)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	X	NC_049260.1 (748192..771608)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	X	NC_049299.1 (734899..758240)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	X	NC_049780.1 (751242..774663)

Chromosome X - NC_051843.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables cytokine receptor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in cytokine-mediated signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in external side of plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: granulocyte-macrophage colony-stimulating factor receptor subunit alpha

Names: colony stimulating factor 2 receptor alpha subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051843.1 Reference ROS_Cfam_1.0

Range

742740..766122

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038449261.1 → XP_038305189.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

UniProtKB/TrEMBL

A0A8I3P791

Related

ENSCAFP00845029368.1, ENSCAFT00845037484.1

Conserved Domains (2) summary

pfam18611
Location:31 → 108

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:119 → 211

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038449260.1 → XP_038305188.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

UniProtKB/TrEMBL

A0A8I3PBB4

Related

ENSCAFP00845029255.1, ENSCAFT00845037345.1

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038449262.1 → XP_038305190.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

UniProtKB/TrEMBL

A0A8I3S2B1

Related

ENSCAFP00845029458.1, ENSCAFT00845037599.1

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RNA

XR_005309177.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

NC_049299.1 Alternate UMICH_Zoey_3.1

Range

734899..758240

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038522695.1 → XP_038378623.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2
XM_038522694.1 → XP_038378622.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1
XM_038522696.1 → XP_038378624.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

RNA

XR_005351936.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049780.1 Alternate UNSW_CanFamBas_1.0

Range

751242..774663

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038651207.1 → XP_038507135.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

Conserved Domains (2) summary

pfam18611
Location:31 → 108

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:119 → 211

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038651206.1 → XP_038507134.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038651208.1 → XP_038507136.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RNA

XR_005419848.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049260.1 Alternate UU_Cfam_GSD_1.0

Range

748192..771608

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038586706.1 → XP_038442634.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

UniProtKB/TrEMBL

A0A8I3P791

Conserved Domains (2) summary

pfam18611
Location:31 → 108

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:119 → 211

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038586705.1 → XP_038442633.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

UniProtKB/TrEMBL

A0A8I3PBB4

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_038586707.1 → XP_038442635.1 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

UniProtKB/TrEMBL

A0A8I3S2B1

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RNA

XR_005386048.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

772774..796202

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_022416018.2 → XP_022271726.2 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2

UniProtKB/TrEMBL

A0A8I3P791

Conserved Domains (2) summary

pfam18611
Location:31 → 108

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:119 → 211

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_005641054.4 → XP_005641111.3 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1

UniProtKB/TrEMBL

A0A8I3PBB4

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
XM_005641059.4 → XP_005641116.3 granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3

UniProtKB/TrEMBL

A0A8I3S2B1

Conserved Domains (2) summary

pfam18611
Location:65 → 142

IL3Ra_N; IL-3 receptor alpha chain N-terminal domain

cl21522
Location:153 → 245

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...