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SLC22A5 solute carrier family 22 member 5 [ Canis lupus familiaris (dog) ]

Gene ID: 608146, updated on 5-Mar-2024

Summary

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Official Symbol
SLC22A5provided by VGNC
Official Full Name
solute carrier family 22 member 5provided by VGNC
Primary source
VGNC:VGNC:46279
See related
Ensembl:ENSCAFG00845010298
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (21444805..21472095)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (19460877..19488092)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (20653571..20680804)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (20163703..20190915)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (20011714..20038930)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene solute carrier family 22 member 4 Neighboring gene uncharacterized LOC111098019 Neighboring gene RAD50 double strand break repair protein Neighboring gene interferon regulatory factor 1 Neighboring gene interleukin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distribution, molecular structure and functional analysis of carnitine transporter (SLC22A5) in canine lens epithelial cells. Ochiai H, et al. Exp Anim, 2014. PMID 25048262, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. high content of carnitine in the lens is possibly transported from aqueous humor by SLC22A5
    Title: Distribution, molecular structure and functional analysis of carnitine transporter (SLC22A5) in canine lens epithelial cells.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 22 member 5
Names
carnitine transporter
solute carrier family 22 (organic cation transporter), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    21444805..21472095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038681481.1 → XP_038537409.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  2. XM_038681479.1 → XP_038537407.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  3. XM_038681480.1 → XP_038537408.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  4. XM_038681482.1 → XP_038537410.1  solute carrier family 22 member 5 isoform X2

    UniProtKB/TrEMBL
    A0A0M5N7F2, A0A8C0N0F2, A0A8I3NDB5
    Related
    ENSCAFP00845014301.1, ENSCAFT00845018323.1
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 520
    2A0119; cation transport protein

  5. XM_038681483.1 → XP_038537411.1  solute carrier family 22 member 5 isoform X3

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 510
    2A0119; cation transport protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    20163703..20190915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038490045.1 → XP_038345973.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  2. XM_038490043.1 → XP_038345971.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  3. XM_038490044.1 → XP_038345972.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  4. XM_038490046.1 → XP_038345974.1  solute carrier family 22 member 5 isoform X2

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 520
    2A0119; cation transport protein

  5. XM_038490047.1 → XP_038345975.1  solute carrier family 22 member 5 isoform X3

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 510
    2A0119; cation transport protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    20011714..20038930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615984.1 → XP_038471912.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  2. XM_038615982.1 → XP_038471910.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  3. XM_038615983.1 → XP_038471911.1  solute carrier family 22 member 5 isoform X1

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  4. XM_038615985.1 → XP_038471913.1  solute carrier family 22 member 5 isoform X2

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 520
    2A0119; cation transport protein

  5. XM_038615986.1 → XP_038471914.1  solute carrier family 22 member 5 isoform X3

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 510
    2A0119; cation transport protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    20653571..20680804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038552125.1 → XP_038408053.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2

  2. XM_038552123.1 → XP_038408051.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2

  3. XM_038552124.1 → XP_038408052.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2

  4. XM_038552126.1 → XP_038408054.1  solute carrier family 22 member 5 isoform X2

    UniProtKB/TrEMBL
    A0A0M5N7F2, A0A8C0KMT0

  5. XM_038552128.1 → XP_038408056.1  solute carrier family 22 member 5 isoform X3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19460877..19488092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022425271.2 → XP_022280979.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  2. XM_022425269.2 → XP_022280977.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  3. XM_022425270.2 → XP_022280978.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A0M5N7F2
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 568
    2A0119; cation transport protein

  4. XM_014117710.3 → XP_013973185.1  solute carrier family 22 member 5 isoform X2

    UniProtKB/TrEMBL
    A0A0M5N7F2, A0A8C0N0F2, A0A8I3NDB5
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 520
    2A0119; cation transport protein

  5. XM_022425272.2 → XP_022280980.1  solute carrier family 22 member 5 isoform X3

    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 510
    2A0119; cation transport protein
Nucleotide Protein
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