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    ALX4 ALX homeobox 4 [ Homo sapiens (human) ]

    Gene ID: 60529, updated on 9-Jun-2013
    Official Symbol
    ALX4provided by HGNC
    Official Full Name
    ALX homeobox 4provided by HGNC
    Primary source
    HGNC:450
    See related
    Ensembl:ENSG00000052850; HPRD:05661; MIM:605420; Vega:OTTHUMG00000166557
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FND2
    Summary
    This gene encodes a paired-like homeodomain transcription factor expressed in the mesenchyme of developing bones, limbs, hair, teeth, and mammary tissue. Mutations in this gene cause parietal foramina 2 (PFM2); an autosomal dominant disease characterized by deficient ossification of the parietal bones. Mutations in this gene also cause a form of frontonasal dysplasia with alopecia and hypogonadism; suggesting a role for this gene in craniofacial development, mesenchymal-epithelial communication, and hair follicle development. Deletion of a segment of chromosome 11 containing this gene, del(11)(p11p12), causes Potocki-Shaffer syndrome (PSS); a syndrome characterized by craniofacial anomalies, mental retardation, multiple exostoses, and genital abnormalities in males. In mouse, this gene has been shown to use dual translation initiation sites located 16 codons apart. [provided by RefSeq, Oct 2009]
    Location :
    11p11.2
    Sequence :
    Chromosome: 11; NC_000011.9 (44282278..44331716, complement)
    See ALX4 in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) Neighboring gene exostosin glycosyltransferase 2 Neighboring gene uncharacterized LOC646535 Neighboring gene CD82 molecule Neighboring gene ribosomal protein L34 pseudogene 22

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Parietal foramina 2

    Summary from GeneReviews: Enlarged Parietal Foramina Go to GeneReviews

    Disease Characteristics
    Enlarged parietal foramina are characteristic symmetric, paired radiolucencies of the parietal bones, located close to the intersection of the sagittal and lambdoid sutures, caused by deficient ossification around the parietal notch, which is normally obliterated by the fifth month of fetal development. Enlarged parietal foramina are usually asymptomatic. Meningeal, cortical, and vascular malformations of the posterior fossa occasionally accompany the bone defects and may predispose to epilepsy. In a minority of individuals, headaches, vomiting, or intense local pain are sometimes associated with the defects, especially on application of mild pressure to the unprotected cerebral cortex.
    Diagnosis Testing
    Typically oval or round, enlarged parietal foramina resemble a 'pair of spectacles' on postero-anterior skull radiographs. They may be less apparent on lateral skull radiographs because the lucencies are projected obliquely through normal bone. In young children, the disorder may present as a persistently enlarged posterior fontanelle caused by a single large central parietal bone defect (cranium bifidum). 3D CT scanning using bone windows clearly reveals the defect. MRI is useful in defining associated intracranial anatomic changes. MSX2 and ALX4 are the two genes in which mutations are known to cause enlarged parietal foramina.
    Genetic Counseling
    Enlarged parietal foramina are inherited in an autosomal dominant manner with high, but not complete, penetrance. Most individuals diagnosed with enlarged parietal foramina have an affected parent. The proportion of cases caused by de novo mutations appears to be small. Each child of an individual with enlarged parietal foramina has a 50% chance of inheriting the mutation. Careful fetal ultrasound examination at 18 to 20 weeks' gestation can usually detect the defects in a fetus at risk. Fetal MRI is also an option. Prenatal diagnosis using molecular genetic testing is possible for families in which the disease-causing mutation has been identified in an affected family member.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9H161 Q15699 ALX1    HPRD  PubMed  
    Q9H161 Q9UJU2 LEF1    HPRD  PubMed  
    Q9H161 P56693 SOX10    HPRD  PubMed  
    BioGRID:121938 BioGRID:121938 ALX4    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:107482 CEBPE    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:108331 EMX1    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:109413 FOXA3    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:108896 GATA4    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:109440 HOXA3    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:115744 HOXB13    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:109456 HOXB6    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:109472 HOXD3    BioGRID  PubMed Two-hybrid 
    BioGRID:121938 BioGRID:112540 SOX2    BioGRID  PubMed Two-hybrid 

    Markers

    Homology

    Clone Names

    • KIAA1788

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    DNA binding NAS
    Non-traceable Author Statement
    more info
    PubMed 
    HMG box domain binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
     
    digestive tract development IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic digit morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic forelimb morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic hindlimb morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    hair follicle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    muscle organ development IEA
    Inferred from Electronic Annotation
    more info
     
    palate development IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of transcription from RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
     
    post-embryonic development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    skeletal system development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus NAS
    Non-traceable Author Statement
    more info
    PubMed 
    transcription factor complex IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    homeobox protein aristaless-like 4
    Names
    homeobox protein aristaless-like 4
    aristaless-like homeobox 4
    homeodomain transcription factor ALX4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_015809.1 RefSeqGene

      Range
      5001..54439
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_021926.3NP_068745.2  homeobox protein aristaless-like 4

      Status: REVIEWED

      Source sequence(s)
      AB058691, AC103854, AF294629
      Consensus CDS
      CCDS31468.1
      UniProtKB/Swiss-Prot
      Q9H161
      Related
      ENSP00000332744, OTTHUMP00000233417, ENST00000329255, OTTHUMT00000390399
      Conserved Domains (2) summary
      cd00086
      Location:215273
      Blast Score: 225
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam03826
      Location:387406
      Blast Score: 110
      OAR; OAR domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      44282278..44331716, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      43991253..44040694, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      44210507..44259989, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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