These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_021790.2 → NP_068562.1 centromere protein K isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) uses alternate 5' exon structure, differs in the 5' UTR, and includes an alternate 3' terminal exon compared to variant 2. This transcript also initiates translation at an alternate start codon, resulting in isoform 1, which is longer and has distinct N- and C-termini compared to isoform 2.
- Source sequence(s)
-
AB043687, AC154216, AV367397
- Consensus CDS
-
CCDS26749.1
- UniProtKB/Swiss-Prot
-
Q9ESN5
- Related
- ENSMUSP00000022227, ENSMUST00000022227
- Conserved Domains (1) summary
-
- pfam11802
Location:36 – 306
Blast Score: 1050
- CENP-K; Centromere-associated protein K
-
NM_181061.5 → NP_851406.1 centromere protein K isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents the longest transcript and encodes the shorter isoform (2).
- Source sequence(s)
-
AK082939, BC028655
- Consensus CDS
-
CCDS26750.1
- UniProtKB/Swiss-Prot
-
Q9ESN5
- Related
- ENSMUSP00000070910, ENSMUST00000070761
- Conserved Domains (1) summary
-
- pfam11802
Location:1 – 228
Blast Score: 781
- CENP-K; Centromere-associated protein K
RNA
-
NR_075088.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site in an internal exon and includes an alternate 3' terminal exon, compared to variant 2. This variant is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC154216, AV367397, BC028655
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCm38.p1 C57BL/6J
Genomic
-
NC_000079.6 Reference GRCm38.p1 C57BL/6J
- Range
- 104228955..104249617
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Mm_Celera
Genomic
-
AC_000035.1 Alternate Mm_Celera
- Range
- 108621358..108642051
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)