RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_007149.1 RefSeqGene
- Range
- 4811..29159
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001130845.1 → NP_001124317.1 B-cell lymphoma 6 protein isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has a downstream and alternate 5' UTR exon, as compared to variant 1.
- Source sequence(s)
-
AW470156, BC146796, BC150184, CN401512
- Consensus CDS
-
CCDS3289.1
- UniProtKB/Swiss-Prot
-
P41182
- Related
- ENSP00000232014, OTTHUMP00000209897, ENST00000232014, OTTHUMT00000344205
- Conserved Domains (2) summary
-
- pfam13465
Location:588 – 613
Blast Score: 101
- zf-H2C2_2; Zinc-finger double domain
- cl02518
Location:22 – 126
Blast Score: 284
- BTB; BTB/POZ domain
-
NM_001134738.1 → NP_001128210.1 B-cell lymphoma 6 protein isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks a coding exon, as compared to variant 1. The reading frame is not affected and the resulting isoform (2) lacks an internal segment, as compared to isoform 2.
- Source sequence(s)
-
AW337942, BC146796, BC150184, EU883531, Z21943
- Consensus CDS
-
CCDS46975.1
- UniProtKB/TrEMBL
-
B5B0A5
- UniProtKB/TrEMBL
-
B8PSA7
- UniProtKB/Swiss-Prot
-
P41182
- Related
- ENSP00000413122, OTTHUMP00000209900, ENST00000450123, OTTHUMT00000344211
- Conserved Domains (3) summary
-
- pfam13465
Location:532 – 557
Blast Score: 104
- zf-H2C2_2; Zinc-finger double domain
- cl02518
Location:22 – 126
Blast Score: 285
- BTB; BTB/POZ domain
- cl15478
Location:519 – 540
Blast Score: 77
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001706.4 → NP_001697.2 B-cell lymphoma 6 protein isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) and variant 2 encode the same isoform (1).
- Source sequence(s)
-
AI624861, BC146796, BC150184, DB079847
- Consensus CDS
-
CCDS3289.1
- UniProtKB/Swiss-Prot
-
P41182
- Related
- ENSP00000384371, OTTHUMP00000209895, ENST00000406870, OTTHUMT00000344202
- Conserved Domains (2) summary
-
- pfam13465
Location:588 – 613
Blast Score: 101
- zf-H2C2_2; Zinc-finger double domain
- cl02518
Location:22 – 126
Blast Score: 284
- BTB; BTB/POZ domain
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000003.11 Reference GRCh37.p5 Primary Assembly
- Range
- 187439165..187463513, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000135.1 Alternate HuRef
- Range
- 184843368..184867718, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Suppressed Reference Sequence(s)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_138931.1: Suppressed sequence
- Description
- NM_138931.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.