GPBP1L1 GC-rich promoter binding protein 1-like 1 [Homo sapiens] - Gene

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Summary

Official Symbol: GPBP1L1provided by HGNC
Official Full Name: GC-rich promoter binding protein 1-like 1provided by HGNC
Primary source: HGNC:28843
Locus tag: SP192
See related: Ensembl:ENSG00000159592; HPRD:15418; Vega:OTTHUMG00000040990
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: SP192; RP11-767N6.1

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Genomic context

Location :: 1p34.1

Sequence :: Chromosome: 1; NC_000001.10 (46092976..46152302, complement)

See GPBP1L1 in Epigenomics, MapViewer

Chromosome 1 - NC_000001.10 Genomic Context describing neighboring genes

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Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

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Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

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Phenotypes

Review eQTL and phenotype association data in this region using PheGenI

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Products	Interactant	Other Gene	Source	Pubs	Description
GC-rich promoter binding protein 1-like 1	P60228	EIF3E	HPRD	PubMed
GC-rich promoter binding protein 1-like 1	Q01844	EWSR1	HPRD	PubMed
GC-rich promoter binding protein 1-like 1	Q9H8W4	PLEKHF2	HPRD	PubMed
BioGRID:121896	BioGRID:109857	EIF3E	BioGRID	PubMed	Two-hybrid
BioGRID:121896	BioGRID:108431	EWSR1	BioGRID	PubMed	Two-hybrid
BioGRID:121896	BioGRID:122791	PLEKHF2	BioGRID	PubMed	Two-hybrid

Function	Evidence Code	Pubs
DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
regulation of transcription, DNA-dependent	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Preferred Names: vasculin-like protein 1

Names: vasculin-like protein 1; GC-rich promoter-binding protein 1-like 1

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NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_021639.4 → NP_067652.1 vasculin-like protein 1

Status: VALIDATED

Source sequence(s)

BC022218, BC068578, BU627076, DA243695

Consensus CDS

CCDS528.1

UniProtKB/Swiss-Prot

Q9HC44

Related

ENSP00000347224, ENST00000355105

RefSeqs of Annotated Genomes: Build 37.3

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh37.p5 Primary Assembly

Genomic

NC_000001.10 Reference GRCh37.p5 Primary Assembly

Range

46092976..46152302, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

AC_000133.1 Alternate HuRef

Range

44204228..44263360, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

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Related Sequences

Nucleotide		Protein
Heading	Accession and Version	Protein
genomic	AL604028.15	CAI16664.1
genomic	CH471059.2	EAX06956.1
		EAX06957.1
		EAX06958.1
		EAX06959.1
		EAX06960.1
mRNA	AF177334.1	AAG17978.1
mRNA	AK024972.1	BAB15047.1
mRNA	AK027212.1	None
mRNA	AK225197.1	None
mRNA	AL834194.1	CAD38884.1
mRNA	BC015713.1	AAH15713.1
mRNA	BC022218.1	AAH22218.1
mRNA	BC022863.1	None
mRNA	BC052257.1	AAH52257.1
mRNA	BC068578.1	None
mRNA	BU627076.1	None
mRNA	DA243695.1	None
other-genetic	DQ892484.2	ABM83410.1
other-genetic	DQ895695.2	ABM86621.1