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pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 595004, updated on 5-Mar-2024

Summary

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Official Symbol
pcmt1provided by Xenbase
Official Full Name
protein-L-isoaspartate (D-aspartate) O-methyltransferaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-959017
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (64012830..64074448)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (66772731..66834217)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105947419 Neighboring gene cell division protein ZipA-like Neighboring gene LDL receptor related protein 11 Neighboring gene dynein light chain Tctex-type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC108394

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within methylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein modification process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein-L-isoaspartate(D-aspartate) O-methyltransferase
NP_001025616.1
XP_012818528.2
XP_031757597.1
XP_031757598.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030445.1 → NP_001025616.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase

    See identical proteins and their annotated locations for NP_001025616.1

    Status: PROVISIONAL

    Source sequence(s)
    BC091076
    UniProtKB/TrEMBL
    Q5BKH1
    Conserved Domains (2) summary
    pfam01135
    Location:8 → 216
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    cl17173
    Location:13 → 220
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    64012830..64074448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012963074.2 → XP_012818528.2  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8J0SNY7
    Conserved Domains (1) summary
    pfam01135
    Location:8 → 216
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

  2. XM_031901737.1 → XP_031757597.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8J1JIA7
    Conserved Domains (1) summary
    pfam01135
    Location:1 → 185
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

  3. XM_031901738.1 → XP_031757598.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8J1JIA8
    Conserved Domains (1) summary
    pfam01135
    Location:1 → 185
    PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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