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elavl3 ELAV like neuron-specific RNA binding protein 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 594912, updated on 5-Mar-2024

Summary

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Official Symbol
elavl3provided by Xenbase
Official Full Name
ELAV like neuron-specific RNA binding protein 3provided by Xenbase
Primary source
Xenbase:XB-GENE-490864
See related
Ensembl:ENSXETG00000016741
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
huc; elrC; hucl; ple21
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (139217828..139251163, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (128354708..128385961, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene outer dynein arm docking complex subunit 3 Neighboring gene PRKCSH beta subunit of glucosidase II Neighboring gene zinc finger protein 653 Neighboring gene ECSIT signalling integrator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ELAV-like protein 3
Names
ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030326.2 → NP_001025497.1  ELAV-like protein 3

    See identical proteins and their annotated locations for NP_001025497.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761704
    UniProtKB/Swiss-Prot
    A4IIS4, Q28FX0
    UniProtKB/TrEMBL
    F6XYR7
    Related
    ENSXETP00000066033.2, ENSXETT00000087961.2
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 342
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    139217828..139251163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012953162.3 → XP_012808616.1  ELAV-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8J0S9Y8, F6TG58
    Conserved Domains (4) summary
    cd12650
    Location:33 → 110
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
    cd12655
    Location:278 → 362
    RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
    TIGR01661
    Location:31 → 361
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:115 → 205
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_012953163.3 → XP_012808617.1  ELAV-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A803K119, F6TG58
    Related
    ENSXETP00000114019.1, ENSXETT00000120032.1
    Conserved Domains (4) summary
    cd12650
    Location:34 → 111
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
    cd12655
    Location:272 → 356
    RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
    TIGR01661
    Location:32 → 355
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:116 → 206
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_012953160.3 → XP_012808614.1  ELAV-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8J0SBJ0, F6TG58
    Conserved Domains (4) summary
    cd12650
    Location:34 → 111
    RRM1_Hu; RNA recognition motif 1 in the Hu proteins family
    cd12655
    Location:279 → 363
    RRM3_HuC; RNA recognition motif 3 in vertebrate Hu-antigen C (HuC)
    TIGR01661
    Location:32 → 362
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cl17169
    Location:116 → 206
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_018092117.2 → XP_017947606.1  ELAV-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A8J0T129, F6TG58
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 348
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  5. XM_012953164.3 → XP_012808618.1  ELAV-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8J0SC90, F6TG58
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 354
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  6. XM_012953161.3 → XP_012808615.1  ELAV-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SCL0, F6TG58
    Related
    ENSXETP00000036509.5, ENSXETT00000036509.5
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 361
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  7. XM_012953165.3 → XP_012808619.1  ELAV-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8J0SBJ5, F6TG58
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 349
    ELAV_HUD_SF; ELAV/HuD family splicing factor

  8. XM_012953167.3 → XP_012808621.1  ELAV-like protein 3 isoform X8

    See identical proteins and their annotated locations for XP_012808621.1

    UniProtKB/TrEMBL
    F6XYR7
    Conserved Domains (1) summary
    TIGR01661
    Location:32 → 341
    ELAV_HUD_SF; ELAV/HuD family splicing factor

RNA

  1. XR_004221853.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28FX0.1 GenPept UniProtKB/Swiss-Prot:Q28FX0

Gene LinkOut

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