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    BCKDHB branched chain keto acid dehydrogenase E1, beta polypeptide [ Homo sapiens (human) ]

    Gene ID: 594, updated on 22-May-2013
    Official Symbol
    BCKDHBprovided by HGNC
    Official Full Name
    branched chain keto acid dehydrogenase E1, beta polypeptideprovided by HGNC
    Primary source
    HGNC:987
    Locus tag
    RP1-279A18.1
    See related
    Ensembl:ENSG00000083123; HPRD:02011; MIM:248611; Vega:OTTHUMG00000016430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    E1B; dJ279A18.1
    Summary
    Branched-chain keto acid dehydrogenase is a multienzyme complex associated with the inner membrane of mitochondria, and functions in the catabolism of branched-chain amino acids. The complex consists of multiple copies of 3 components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). This gene encodes the E1 beta subunit, and mutations therein have been associated with maple syrup urine disease (MSUD), type 1B, a disease characterized by a maple syrup odor to the urine in addition to mental and physical retardation, and feeding problems. Alternative splicing at this locus results in transcript variants with different 3' non-coding regions, but encoding the same isoform. [provided by RefSeq, Jul 2008]
    Location :
    6q14.1
    Sequence :
    Chromosome: 6; NC_000006.11 (80816344..81055987)
    See BCKDHB in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 21 pseudogene Neighboring gene adenylate kinase 4 pseudogene 5 Neighboring gene ribosomal protein L17 pseudogene 25 Neighboring gene citrate synthase, mitochondrial-like

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Maple syrup urine disease

    Summary from GeneReviews: Maple Syrup Urine Disease Go to GeneReviews

    Disease Characteristics
    Maple syrup urine disease (MSUD) is classified as classic or intermediate. Twelve hours after birth, untreated neonates with classic MSUD have a maple syrup odor in cerumen; by 12-24 hours, elevated plasma concentrations of branched-chain amino acids (BCAAs) (leucine, isoleucine, and valine) and allo-isoleucine, as well as a generalized disturbance of plasma amino acid concentration ratios; by age two to three days, ketonuria, irritability, and poor feeding; by age four to five days, deepening encephalopathy manifesting as lethargy, intermittent apnea, opisthotonus, and stereotyped movements such as "fencing" and "bicycling." By age seven to ten days, coma and central respiratory failure may supervene. Individuals with intermediate MSUD have partial BCKAD enzyme deficiency that only manifests intermittently or responds to dietary thiamine therapy; these individuals can experience severe metabolic intoxication and encephalopathy during sufficient catabolic stress.
    Diagnosis Testing
    MSUD is diagnosed by the presence of clinical features, elevated BCAAs and allo-isoleucine in plasma, and branched-chain hydroxyacids and ketoacids (BCKAs) in urine. Newborn screening (NBS) programs that employ tandem mass spectrometry detect MSUD by measuring the whole blood combined leucine-isoleucine concentration and its ratio to other amino acids such as alanine and phenylalanine. The three genes in which mutations are associated with MSUD are BCKDHA, encoding BCKA decarboxylase (E1) alpha subunit (MSUD type 1A); BCKDHB, encoding BCKA decarboxylase (E1) beta subunit (MSUD type 1B); and DBT, encoding dihydrolipoyl transacylase (E2) subunit (MSUD type 2). Molecular genetic testing of all three genes is available on a clinical basis.
    Genetic Counseling
    MSUD is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being unaffected and a carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal diagnosis for pregnancies at increased risk are possible if the disease-causing mutations have been identified in an affected family member.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P21953 P12694 BCKDHA    HPRD  PubMed  
    BioGRID:107066 BioGRID:114030 CUL3    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • FLJ17880

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity IEA
    Inferred from Electronic Annotation
    more info
     
    alpha-ketoacid dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
     
    carboxy-lyase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    branched-chain amino acid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    branched-chain amino acid catabolic process TAS
    Traceable Author Statement
    more info
     
    cellular nitrogen compound metabolic process TAS
    Traceable Author Statement
    more info
     
    response to cAMP IEA
    Inferred from Electronic Annotation
    more info
     
    response to glucocorticoid stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to nutrient IEA
    Inferred from Electronic Annotation
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    mitochondrial alpha-ketoglutarate dehydrogenase complex IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitochondrial matrix TAS
    Traceable Author Statement
    more info
     
    mitochondrion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Preferred Names
    2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
    Names
    2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
    BCKDE1B
    BCKDH E1-beta
    2-oxoisovalerate dehydrogenase beta subunit
    E1b-beta subunit of the branched-chain complex
    branched chain alpha-ketoacid dehydrogenase E1-beta subunit
    branched-chain alpha-keto acid dehydrogenase E1 component beta chain
    NP_000047.1
    NP_898871.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009775.1 RefSeqGene

      Range
      5001..244644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000056.3NP_000047.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) is missing a segment in the 3' UTR compared to transcript variant 1, and thus has a shorter 3' UTR. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      BC034481, DB548202, DC372349, U50708
      Consensus CDS
      CCDS4994.1
      UniProtKB/Swiss-Prot
      P21953
      UniProtKB/TrEMBL
      Q5T2J3
      Related
      ENSP00000348880, OTTHUMP00000018049, ENST00000356489, OTTHUMT00000043912
      Conserved Domains (3) summary
      cd07036
      Location:75241
      Blast Score: 608
      TPP_PYR_E1-PDHc-beta_like; Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins.
      PTZ00182
      Location:66390
      Blast Score: 1356
      PTZ00182; 3-methyl-2-oxobutanate dehydrogenase; Provisional
      pfam02780
      Location:262377
      Blast Score: 361
      Transketolase_C; Transketolase, C-terminal domain
    2. NM_183050.2NP_898871.1  2-oxoisovalerate dehydrogenase subunit beta, mitochondrial precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AL049696, DC372349, M55575
      Consensus CDS
      CCDS4994.1
      UniProtKB/Swiss-Prot
      P21953
      Related
      ENSP00000318351, OTTHUMP00000018048, ENST00000320393, OTTHUMT00000043911
      Conserved Domains (3) summary
      cd07036
      Location:75241
      Blast Score: 608
      TPP_PYR_E1-PDHc-beta_like; Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins.
      PTZ00182
      Location:66390
      Blast Score: 1356
      PTZ00182; 3-methyl-2-oxobutanate dehydrogenase; Provisional
      pfam02780
      Location:262377
      Blast Score: 361
      Transketolase_C; Transketolase, C-terminal domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      80816344..81055987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      78039157..78278814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      80788145..81027761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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