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    TRPV4 transient receptor potential cation channel, subfamily V, member 4 [ Homo sapiens (human) ]

    Gene ID: 59341, updated on 16-Jun-2013
    Official Symbol
    TRPV4provided by HGNC
    Official Full Name
    transient receptor potential cation channel, subfamily V, member 4provided by HGNC
    Primary source
    HGNC:18083
    See related
    Ensembl:ENSG00000111199; HPRD:05667; MIM:605427; Vega:OTTHUMG00000169277
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SMAL; VRL2; CMT2C; SPSMA; TRP12; VROAC; HMSN2C; OTRPC4; SSQTL1
    Summary
    This gene encodes a member of the OSM9-like transient receptor potential channel (OTRPC) subfamily in the transient receptor potential (TRP) superfamily of ion channels. The encoded protein is a Ca2+-permeable, nonselective cation channel that is thought to be involved in the regulation of systemic osmotic pressure. Mutations in this gene are the cause of spondylometaphyseal and metatropic dysplasia and hereditary motor and sensory neuropathy type IIC. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2010]
    Location :
    12q24.1
    Sequence :
    Chromosome: 12; NC_000012.11 (110220892..110271212, complement)
    See TRPV4 in Epigenomics, MapViewer

    Chromosome 12 - NC_000012.11Genomic Context describing neighboring genes Neighboring gene mevalonate kinase Neighboring gene family with sequence similarity 222, member A Neighboring gene FAM222A antisense RNA 1 Neighboring gene microRNA 4497 Neighboring gene glycolipid transfer protein Neighboring gene trichoplein, keratin filament binding

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Charcot-Marie-Tooth disease type 2C

    Summary from GeneReviews: Charcot-Marie-Tooth Neuropathy Type 2 Go to GeneReviews

    Disease Characteristics
    Charcot-Marie-Tooth hereditary neuropathy type 2 (CMT2) is an axonal (non-demyelinating) peripheral neuropathy characterized by distal muscle weakness and atrophy, mild sensory loss, and normal or near-normal nerve conduction velocities. CMT2 is clinically similar to CMT1, although typically less severe. Peripheral nerves are not enlarged or hypertrophic. The subtypes of CMT2 are similar clinically and distinguished only by molecular genetic findings.
    Diagnosis Testing
    The diagnosis is based on clinical findings and EMG/NCV characteristics. The 15 genes in which mutations are known to cause CMT2 subtypes are KIF1B (CMT2A1), MFN2 (CMT2A2), RAB7A (formerly RAB7) (CMT2B), LMNA (CMT2B1), MED25 (CMT2B2), TRPV4 (CMT2C), GARS (CMT2D), NEFL (CMT2E/1F), HSPB1 (CMT2F), MPZ (CMT2I/J), GDAP1 (CMT2H/K), HSPB8 (CMT2L), AARS (CMT2N), DYNC1H1 (CMT2O), and LRSAM1 (CMT2P).
    Genetic Counseling
    CMT2B1, CMT2B2, and CMT2H/K are inherited in an autosomal recessive manner; all other subtypes of CMT2 are inherited in an autosomal dominant manner. Most probands with autosomal dominant subtypes of CMT2 have inherited the disease-causing mutation from an affected parent. The offspring of an affected individual with autosomal dominant CMT2 are at a 50% risk of inheriting the altered gene.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9HBA0 Calmodulin 1 CALM1    HPRD  PubMed  
    Q9HBA0 P06241 FYN    HPRD  PubMed  
    Q9HBA0 P08631 HCK    HPRD  PubMed  
    Q9HBA0 Q96J02 ITCH    HPRD  PubMed  
    Q9HBA0 P06239 LCK    HPRD  PubMed  
    Q9HBA0 P07948 LYN    HPRD  PubMed  
    Q9HBA0 Q14244 MAP7    HPRD  PubMed  
    Q9HBA0 Q9BY11 PACSIN1    HPRD  PubMed  
    Q9HBA0 Q9UNF0 PACSIN2    HPRD  PubMed  
    Q9HBA0 Q9UKS6 PACSIN3    HPRD  PubMed  
    Q9HBA0 P12931 SRC    HPRD  PubMed  
    Q9HBA0 Q9HBA0 TRPV4    HPRD  PubMed  
    Q9HBA0 P07947 YES1    HPRD  PubMed  
    BioGRID:121883 BioGRID:106902 ARRB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121883 BioGRID:108810 FYN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121883 BioGRID:109305 HCK    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121883 BioGRID:123747 ITCH    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121883 BioGRID:107330 KRIT1    BioGRID  PubMed Protein-peptide 
    BioGRID:121883 BioGRID:110124 LCK    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121883 BioGRID:110245 LYN    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:121883 BioGRID:114515 MAP7    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:121883 BioGRID:116156 OS9    BioGRID  PubMed Affinity Capture-Western 
    NP_060496.2 PACS1    BIND  PubMed PACS-1 interacts with an unspecified isoform of TRPV4. 
    BioGRID:121883 BioGRID:112592 SRC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121883 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:121883 BioGRID:113357 YES1    BioGRID  PubMed Affinity Capture-Western 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    SH2 domain binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    actin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    actin filament binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    alpha-tubulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    beta-tubulin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    calmodulin binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cation channel activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    microtubule binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    osmosensor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein kinase C binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    actin cytoskeleton reorganization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    actin filament organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium ion import ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    calcium ion transport IDA
    Inferred from Direct Assay
    more info
    PubMed 
    calcium ion transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    cell volume homeostasis TAS
    Traceable Author Statement
    more info
    PubMed 
    cell-cell junction assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular calcium ion homeostasis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cellular hypotonic response ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to osmotic stress ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cortical microtubule organization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    elevation of cytosolic calcium ion concentration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    hyperosmotic salinity response IEA
    Inferred from Electronic Annotation
    more info
     
    microtubule polymerization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of neuron projection development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    osmosensory signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    osmosensory signaling pathway TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of microtubule depolymerization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of response to osmotic stress IEA
    Inferred from Electronic Annotation
    more info
     
    response to mechanical stimulus TAS
    Traceable Author Statement
    more info
    PubMed 
    vasopressin secretion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    adherens junction ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cortical actin cytoskeleton ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    colocalizes_with cytoplasmic microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    filopodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    focal adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    growth cone ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    integral to membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    lamellipodium ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    ruffle membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    transient receptor potential cation channel subfamily V member 4
    Names
    transient receptor potential cation channel subfamily V member 4
    osm-9-like TRP channel 4
    vanilloid receptor-like channel 2
    transient receptor potential protein 12
    OSM9-like transient receptor potential channel 4
    osmosensitive transient receptor potential channel 4
    vanilloid receptor-related osmotically activated channel

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_017090.1 RefSeqGene

      Range
      5001..55321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_372

    mRNA and Protein(s)

    1. NM_001177428.1NP_001170899.1  transient receptor potential cation channel subfamily V member 4 isoform e

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (c) is shorter, compared to isoform a.
      Source sequence(s)
      AB032427, AC007834, DA869138, DQ059644
      Consensus CDS
      CCDS53828.1
      UniProtKB/Swiss-Prot
      Q9HBA0
      Related
      ENSP00000442167, OTTHUMP00000240664, ENST00000541794, OTTHUMT00000403275
      Conserved Domains (3) summary
      cd00204
      Location:189343
      Blast Score: 114
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00520
      Location:507671
      Blast Score: 176
      Ion_trans; Ion transport protein
      pfam12796
      Location:242347
      Blast Score: 87
      Ank_2; Ankyrin repeats (3 copies)
    2. NM_001177431.1NP_001170902.1  transient receptor potential cation channel subfamily V member 4 isoform d

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks a segment in the 5' coding region coding region, compared to variant 1. The encoded isoform (d) is shorter, compared to isoform a.
      Source sequence(s)
      AB032427, AC007834, AF279673, DQ059645
      Consensus CDS
      CCDS53829.1
      UniProtKB/Swiss-Prot
      Q9HBA0
      Related
      ENSP00000444336, OTTHUMP00000240665, ENST00000536838, OTTHUMT00000403276
      Conserved Domains (3) summary
      cd00204
      Location:202356
      Blast Score: 158
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00520
      Location:520684
      Blast Score: 174
      Ion_trans; Ion transport protein
      pfam12796
      Location:180284
      Blast Score: 109
      Ank_2; Ankyrin repeats (3 copies)
    3. NM_001177433.1NP_001170904.1  transient receptor potential cation channel subfamily V member 4 isoform c

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks two in-frame exons in the coding region, compared to variant 1. The encoded isoform (c) is shorter, compared to isoform a.
      Source sequence(s)
      AB032427, BC143315, DQ059646
      Consensus CDS
      CCDS53827.1
      UniProtKB/Swiss-Prot
      Q9HBA0
      Related
      ENSP00000443611, OTTHUMP00000240662, ENST00000544971, OTTHUMT00000403273
      Conserved Domains (2) summary
      cd00204
      Location:189336
      Blast Score: 109
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:149692
      Blast Score: 915
      trp; transient-receptor-potential calcium channel protein
    4. NM_021625.4NP_067638.3  transient receptor potential cation channel subfamily V member 4 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AB032427, AC007834, AJ296305
      Consensus CDS
      CCDS9134.1
      UniProtKB/Swiss-Prot
      Q9HBA0
      Related
      ENSP00000261740, OTTHUMP00000240660, ENST00000261740, OTTHUMT00000403271
      Conserved Domains (3) summary
      cd00204
      Location:236390
      Blast Score: 160
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00520
      Location:554718
      Blast Score: 177
      Ion_trans; Ion transport protein
      pfam12796
      Location:214318
      Blast Score: 109
      Ank_2; Ankyrin repeats (3 copies)
    5. NM_147204.2NP_671737.1  transient receptor potential cation channel subfamily V member 4 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1, resulting in an isoform (b) that lacks an internal segment compared to isoform a.
      Source sequence(s)
      AB032427, AB073669, AC007834, BC143315
      Consensus CDS
      CCDS9135.1
      UniProtKB/Swiss-Prot
      Q9HBA0
      Related
      ENSP00000442738, OTTHUMP00000240663, ENST00000537083, OTTHUMT00000403274
      Conserved Domains (3) summary
      cd00204
      Location:236383
      Blast Score: 154
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam00520
      Location:494658
      Blast Score: 176
      Ion_trans; Ion transport protein
      pfam12796
      Location:214318
      Blast Score: 109
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000012.11 Reference GRCh37.p10 Primary Assembly

      Range
      110220892..110271212, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000144.1 Alternate HuRef

      Range
      107237035..107287147, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018923.1 Alternate CHM1_1.0

      Range
      110018098..110068410, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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