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    RAPSN receptor-associated protein of the synapse [ Homo sapiens (human) ]

    Gene ID: 5913, updated on 22-May-2013
    Official Symbol
    RAPSNprovided by HGNC
    Official Full Name
    receptor-associated protein of the synapseprovided by HGNC
    Primary source
    HGNC:9863
    See related
    Ensembl:ENSG00000165917; HPRD:03353; MIM:601592; Vega:OTTHUMG00000166891
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RAPSYN; RNF205
    Summary
    This gene encodes a member of a family of proteins that are receptor associated proteins of the synapse. The encoded protein contains a conserved cAMP-dependent protein kinase phosphorylation site, and plays a critical role in clustering and anchoring nicotinic acetylcholine receptors at synaptic sites by linking the receptors to the underlying postsynaptic cytoskeleton, possibly by direct association with actin or spectrin. Mutations in this gene may play a role in postsynaptic congenital myasthenic syndromes. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Apr 2011]
    Location :
    11p11.2
    Sequence :
    Chromosome: 11; NC_000011.9 (47459308..47470730, complement)
    See RAPSN in Epigenomics, MapViewer

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 (zinc transporter), member 13 Neighboring gene proteasome (prosome, macropain) 26S subunit, ATPase, 3 Neighboring gene CUGBP, Elav-like family member 1 Neighboring gene protein tyrosine phosphatase, mitochondrial 1 Neighboring gene kelch repeat and BTB (POZ) domain containing 4

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency

    Summary from GeneReviews: Congenital Myasthenic Syndromes Go to GeneReviews

    Disease Characteristics
    Congenital myasthenic syndromes (designated as CMS throughout this entry) are characterized by fatigable weakness of skeletal muscle (e.g., ocular, bulbar, limb muscles) with onset at or shortly after birth or in early childhood; rarely, symptoms may not manifest until later in childhood. Cardiac and smooth muscle are not involved. Severity and course of disease are highly variable, ranging from minor symptoms to progressive disabling weakness. In some subtypes of CMS, myasthenic symptoms may be mild, but sudden severe exacerbations of weakness or even sudden episodes of respiratory insufficiency may be precipitated by fever, infections, or excitement. Major findings of the neonatal onset subtype include: feeding difficulties; poor suck and cry; choking spells; eyelid ptosis; facial, bulbar, and generalized weakness. In addition arthrogryposis multiplex congenital may be present; respiratory insufficiency with sudden apnea and cyanosis may occur. Later childhood onset subtypes show abnormal muscle fatigability with difficulty in activities such as running or climbing stairs; motor milestones may be delayed; fluctuating eyelid ptosis and fixed or fluctuating extraocular muscle weakness are common presentations.
    Diagnosis Testing
    The diagnosis of CMS is based on clinical findings, a decremental EMG response of the compound muscle action potential (CMAP) on low-frequency (2-3 Hz) stimulation, absence of anti-acetylcholine receptor (AChR) and anti-MuSK antibodies in the serum, and lack of improvement of clinical symptoms with immunosuppressive therapy. Mutations in one of multiple genes encoding proteins expressed at the neuromuscular junction are currently known to be associated with subtypes of CMS, including the genes encoding different subunits of the acetylcholine receptor: CHRNE (epsilonAChR subunit) . CHRNA1 (alphaAChR subunit). CHRNB1 (betaAChR subunit). CHRND (deltaAChR-subunit). AGRN encoding agrin. CHAT encoding choline O-acetyltransferase. COLQ encoding acetylcholinesterase collagenic tail peptide. DOK7 encoding protein Dok-7 . GFPT1 encoding glucosamine--fructose-6-phosphate aminotransferase 1 . MUSK encoding muscle, skeletal receptor tyrosine protein kinase . RAPSN encoding rapsyn (43-kd receptor-associated protein of the synapse). SCN4A encoding the sodium channel protein type 4 subunit alpha. Clinical molecular genetic testing is available for all of these genes.
    Genetic Counseling
    Congenital myasthenic syndromes are inherited in an autosomal recessive, or, less frequently, autosomal dominant manner. In autosomal recessive CMS (AR-CMS), the parents of an affected child are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. In autosomal dominant CMS (AD-CMS), some individuals have an affected parent while others have a de novo mutation. The proportion of cases caused by de novo mutations is unknown. Each child of an individual with AD-CMS has a 50% chance of inheriting the mutation. Prenatal testing for pregnancies at increased risk is possible in a clinical laboratory for most subtypes of CMS if the disease-causing mutations in a family are known; prenatal testing for the remaining subtypes may be available through laboratories offering custom prenatal testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q13702 P11230 CHRNB1    HPRD  PubMed  
    Q13702 Q14118 DAG1    HPRD  PubMed  
    Q13702 P62993 GRB2    HPRD  PubMed  
    Q13702 Q07666 KHDRBS1    HPRD  PubMed  
    Q13702 O15146 MUSK    HPRD  PubMed  
    BioGRID:111848 BioGRID:107975 DAG1    BioGRID  PubMed Co-localization 
    BioGRID:111848 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-Luminescence 
    BioGRID:111848 BioGRID:115900 KHDRBS1    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:111848 BioGRID:122419 UBE2Z    BioGRID  PubMed Two-hybrid 

    Markers

    Homology

    Clone Names

    • MGC3597

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    acetylcholine receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ionotropic glutamate receptor binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    positive regulation of neuron apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    synaptic transmission TAS
    Traceable Author Statement
    more info
    PubMed 
    synaptic transmission, cholinergic IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    neuromuscular junction IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
     
    postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    43 kDa receptor-associated protein of the synapse
    Names
    43 kDa receptor-associated protein of the synapse
    RING finger protein 205
    43 kda postsynaptic protein
    acetylcholine receptor-associated 43 kda protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008312.1 RefSeqGene

      Range
      5001..16423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_005055.4NP_005046.2  43 kDa receptor-associated protein of the synapse isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC090559, AF449218
      Consensus CDS
      CCDS7936.1
      UniProtKB/Swiss-Prot
      Q13702
      Related
      ENSP00000298854, OTTHUMP00000234335, ENST00000298854, OTTHUMT00000391726
      Conserved Domains (4) summary
      cd00162
      Location:363405
      Blast Score: 84
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd00189
      Location:124235
      Blast Score: 121
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam10579
      Location:180
      Blast Score: 350
      Rapsyn_N; Rapsyn N-terminal myristoylation and linker region
      pfam13424
      Location:204275
      Blast Score: 112
      TPR_12; Tetratricopeptide repeat
    2. NM_032645.4NP_116034.2  43 kDa receptor-associated protein of the synapse isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks two consecutive exons in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AC090559, BC004196
      Consensus CDS
      CCDS7937.1
      UniProtKB/Swiss-Prot
      Q13702
      Related
      ENSP00000298853, OTTHUMP00000234336, ENST00000352508, OTTHUMT00000391728
      Conserved Domains (4) summary
      cd00162
      Location:304346
      Blast Score: 80
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      cd00189
      Location:124235
      Blast Score: 121
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam10579
      Location:180
      Blast Score: 350
      Rapsyn_N; Rapsyn N-terminal myristoylation and linker region
      pfam13424
      Location:204263
      Blast Score: 100
      TPR_12; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      47459308..47470730, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      47159075..47170494, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      47384879..47396300, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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