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    RAD51C RAD51 homolog C (S. cerevisiae) [ Homo sapiens (human) ]

    Gene ID: 5889, updated on 22-May-2013
    Official Symbol
    RAD51Cprovided by HGNC
    Official Full Name
    RAD51 homolog C (S. cerevisiae)provided by HGNC
    Primary source
    HGNC:9820
    See related
    Ensembl:ENSG00000108384; HPRD:04143; MIM:602774; Vega:OTTHUMG00000141292
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FANCO; BROVCA3; RAD51L2
    Summary
    This gene is a member of the RAD51 family of related genes, which encode strand-transfer proteins thought to be involved in recombinational repair of damaged DNA and in meiotic recombination. This gene product interacts with two other DNA repair proteins, encoded by RAD51B and XRCC3, but not with itself. The protein copurifies with XRCC3 protein in a complex, reflecting their endogenous association and suggesting a cooperative role during recombinational repair. This gene is one of four localized to a region of chromosome 17q23 where amplification occurs frequently in breast tumors. Overexpression of the four genes during amplification has been observed and suggests a possible role in tumor progression. Alternative splicing has been observed for this gene and two variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]
    Location :
    17q25.1
    Sequence :
    Chromosome: 17; NC_000017.10 (56769963..56811692)
    See RAD51C in Epigenomics, MapViewer

    Chromosome 17 - NC_000017.10Genomic Context describing neighboring genes Neighboring gene chromosome 17 open reading frame 47 Neighboring gene testis expressed 14 Neighboring gene immunoglobulin (CD79A) binding protein 1 pseudogene 2 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1E Neighboring gene ribosomal protein S12 pseudogene 30 Neighboring gene tripartite motif containing 37

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Fanconi anemia, complementation group O

    Summary from GeneReviews: Fanconi Anemia Go to GeneReviews

    Disease Characteristics
    Fanconi anemia (FA) is characterized by physical abnormalities, bone marrow failure, and increased risk of malignancy. Physical abnormalities, present in 60%-75% of affected individuals, include one or more of the following: short stature; abnormal skin pigmentation; malformations of the thumbs, forearms, skeletal system, eyes, kidneys and urinary tract, ears (and decreased hearing), heart, gastrointestinal system, central nervous system; hypogonadism; and developmental delay. Progressive bone marrow failure with pancytopenia typically presents in the first decade, often initially with thrombocytopenia or leukopenia. By age 40 to 50 years, the estimated cumulative incidence of bone marrow failure is 90%; the incidence of hematologic malignancies (primarily acute myeloid leukemia) 10%-30%; and of nonhematologic malignancies (solid tumors, particularly of the head and neck, skin, GI tract, and genital tract) 25%-30%.
    Diagnosis Testing
    The diagnosis of FA rests upon the detection of chromosomal aberrations (breaks, rearrangements, radials, exchanges) in cells after culture with a DNA interstrand cross-linking agent such as diepoxybutane (DEB) or mitomycin C (MMC). Molecular genetic testing is complicated by the presence of at least 15 genes, which are responsible for the known FA complementation groups (A, B, C, D1 [BRCA2], D2, E, F, G, I, J [BRIP1], L, M, N [PALB2], O [RAD51C], and P [SLX4]). The latter two genes are still thought of as tentative as they do not fall within a very easily characterized compartment biologically and have very few representative individuals. If the relevant complementation group is identified, molecular genetic testing can be directed to the appropriate gene. Molecular genetic testing is clinically available for all of the genes.
    Genetic Counseling
    Abnormalities of Fanconi anemia (FA) genes are inherited in an autosomal recessive manner except for mutations in FANCB, which are inherited in an X-linked manner. Autosomal recessive FA: Each sibling of an affected individual has a 25% chance of inheriting both mutations and being affected, a 50% chance of inheriting one mutated gene and being a carrier, and a 25% chance of inheriting both normal genes and not being a carrier. Carriers (heterozygotes) for autosomal recessive FA are asymptomatic. X-linked FA: For carrier females the chance of transmitting the mutation in each pregnancy is 50%; males who inherit the mutation will be affected; females who inherit the mutation will be carriers and will usually not be affected. For both autosomal recessive and X-linked FA: Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for all known genes if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    O43502 Q06609 RAD51    HPRD  PubMed  
    O43502 O15315 RAD51B    HPRD  PubMed  
    O43502 O75771 RAD51D    HPRD  PubMed  
    O43502 O43542 XRCC3    HPRD  PubMed  
    BioGRID:111826 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111826 BioGRID:1777030 HHV8GK18_gp81    BioGRID  PubMed Far Western 
    BioGRID:111826 BioGRID:111825 RAD51    BioGRID  PubMed Affinity Capture-Western; Co-localization 
    BioGRID:111826 BioGRID:111827 RAD51B    BioGRID  PubMed Affinity Capture-Western; Co-purification; Two-hybrid 
    BioGRID:111826 BioGRID:111829 RAD51D    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111826 BioGRID:125954 SWSAP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111826 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111826 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111826 BioGRID:113350 XRCC2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111826 BioGRID:113351 XRCC3    BioGRID  PubMed Affinity Capture-Western; Co-fractionation; Co-purification; Two-hybrid 
    • Factors involved in megakaryocyte development and platelet production, organism-specific biosystem (from REACTOME)
      Factors involved in megakaryocyte development and platelet production, organism-specific biosystemMegakaryocytes (MKs) give rise to circulating platelets (thrombocytes) through terminal differentiation of MKs which release cytoplasmic fragments as circulating platelets. As MKs mature they underg...
    • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
      Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Fanconi anemia pathway, conserved biosystem (from KEGG)
      Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Hemostasis, organism-specific biosystem (from REACTOME)
      Hemostasis, organism-specific biosystemHemostasis is a physiological response that culminates in the arrest of bleeding from an injured vessel. Under normal conditions the vascular endothelium supports vasodilation, inhibits platelet adhe...
    • Homologous recombination, organism-specific biosystem (from KEGG)
      Homologous recombination, organism-specific biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
    • Homologous recombination, conserved biosystem (from KEGG)
      Homologous recombination, conserved biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
    • Meiosis, organism-specific biosystem (from REACTOME)
      Meiosis, organism-specific biosystemDuring meiosis the replicated chromosomes of a single diploid cell are segregated into 4 haploid daughter cells by two successive divisions, meiosis I and meiosis II. In meiosis I, the distinguishing...
    • Meiotic Recombination, organism-specific biosystem (from REACTOME)
      Meiotic Recombination, organism-specific biosystemMeiotic recombination exchanges segments of duplex DNA between chromosomal homologs, generating genetic diversity (reviewed in Handel and Schimenti 2010, Inagaki et al. 2010, Cohen et al. 2006). Ther...

    Markers

    Homology

    Clone Names

    • MGC104277

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-dependent ATPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    crossover junction endodeoxyribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
     
    Process Evidence Code Pubs
    DNA recombination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA repair IDA
    Inferred from Direct Assay
    more info
    PubMed 
    blood coagulation TAS
    Traceable Author Statement
    more info
     
    female meiosis sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
     
    male meiosis I IEA
    Inferred from Electronic Annotation
    more info
     
    reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
     
    sister chromatid cohesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion IDA
    Inferred from Direct Assay
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    DNA repair protein RAD51 homolog 3
    Names
    DNA repair protein RAD51 homolog 3
    R51H3
    RAD51-like protein 2
    yeast RAD51 homolog 3
    RAD51 homolog C, isoform 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_023199.1 RefSeqGene

      Range
      5001..46730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_002876.2NP_002867.1  DNA repair protein RAD51 homolog 3 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This shorter variant (2) does not use the exon 2 splice donor site used by variant 1, but continues downstream where a polyA signal and site are located. A translational stop immediately following the alternate splice site produces a truncated isoform (2) compared to isoform 1.
      Source sequence(s)
      AF029669, AF029670
      Consensus CDS
      CCDS45745.1
      UniProtKB/Swiss-Prot
      O43502
      Related
      ENSP00000391450, OTTHUMP00000233439, ENST00000421782, OTTHUMT00000390431
      Conserved Domains (1) summary
      cl09099
      Location:100134
      Blast Score: 141
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    2. NM_058216.1NP_478123.1  DNA repair protein RAD51 homolog 3 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) is the longer transcript and encodes the full-length isoform (1).
      Source sequence(s)
      AF029669
      Consensus CDS
      CCDS11611.1
      UniProtKB/Swiss-Prot
      O43502
      Related
      ENSP00000336701, OTTHUMP00000180604, ENST00000337432, OTTHUMT00000280540
      Conserved Domains (2) summary
      cd01123
      Location:100347
      Blast Score: 598
      Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...
      PRK04301
      Location:10348
      Blast Score: 389
      radA; DNA repair and recombination protein RadA; Validated

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000017.10 Reference GRCh37.p10 Primary Assembly

      Range
      56769963..56811692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000149.1 Alternate HuRef

      Range
      52130465..52172207
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018928.1 Alternate CHM1_1.0

      Range
      57785498..57827227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_058217.1: Suppressed sequence

      Description
      NM_058217.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.

      Supplemental Content

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