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LOC580005 sphingosine kinase 2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 580005, updated on 14-Dec-2023

Summary

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Gene symbol
LOC580005
Gene description
sphingosine kinase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145599.1 (22792328..22810998, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578046.1 (207628..229396, complement)

NW_022145599.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein 112 Neighboring gene Fas binding factor 1 Neighboring gene 2,4-dienoyl-CoA reductase 2 Neighboring gene sodium-dependent multivitamin transporter

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145599.1 Reference Spur_5.0 Primary Assembly

    Range
    22792328..22810998 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003729029.3 → XP_003729077.2  sphingosine kinase 2

    UniProtKB/TrEMBL
    A0A7M7LPL8
    Conserved Domains (1) summary
    PLN02958
    Location:172 → 547
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
Nucleotide Protein
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