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arih1 ariadne RBR E3 ubiquitin protein ligase 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579288, updated on 14-Dec-2023

Summary

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Symbol
arih1
Full Name
ariadne RBR E3 ubiquitin protein ligase 1
Primary source
EchinoBase:ECB-GENE-23195814
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See arih1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145615.1 (32825474..32849116, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577208.1 (291196..317774)

NW_022145615.1Genomic Context describing neighboring genes Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene cytochrome c oxidase subunit 5A Neighboring gene uncharacterized LOC115920755 Neighboring gene uncharacterized LOC115920756

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase arih1
Names
ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145615.1 Reference Spur_5.0 Primary Assembly

    Range
    32825474..32849116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030977306.1 → XP_030833166.1  E3 ubiquitin-protein ligase arih1 isoform X2

    UniProtKB/TrEMBL
    A0A7M7N9C7
    Conserved Domains (3) summary
    smart00647
    Location:213 → 273
    IBR; In Between Ring fingers
    cd16626
    Location:141 → 198
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:295 → 335
    IBR; IBR domain, a half RING-finger domain

  2. XM_030977305.1 → XP_030833165.1  E3 ubiquitin-protein ligase arih1 isoform X1

    UniProtKB/TrEMBL
    A0A7M7N9J6
    Conserved Domains (3) summary
    smart00647
    Location:213 → 273
    IBR; In Between Ring fingers
    cd16626
    Location:141 → 198
    RING-HC_RBR_HHARI; RING finger, HC subclass, found in human homolog of Drosophila ariadne (HHARI) and similar proteins
    pfam01485
    Location:295 → 335
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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