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LOC579018 retinoic X receptor-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579018, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579018
Gene description
retinoic X receptor-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (34870958..34907696)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577809.1 (350543..427946)

NW_022145610.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 764-like Neighboring gene RNA polymerase II associated protein 2 Neighboring gene alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase Neighboring gene uncharacterized LOC100888222

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear steroid receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retinoic acid-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to retinoic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retinoic acid receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinoic acid receptor RXR

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

    Range
    34870958..34907696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030997392.1 → XP_030853252.1  retinoic acid receptor RXR isoform X2

    UniProtKB/TrEMBL
    A0A7M7PKY7, Q3HYJ8

  2. XM_030997390.1 → XP_030853250.1  retinoic acid receptor RXR isoform X1

    UniProtKB/TrEMBL
    A0A7M7PMF3, Q3HYJ8
    Conserved Domains (2) summary
    cd06943
    Location:112 → 315
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:9 → 91
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers

  3. XM_030997391.1 → XP_030853251.1  retinoic acid receptor RXR isoform X1

    UniProtKB/TrEMBL
    A0A7M7PMF3, Q3HYJ8
    Conserved Domains (2) summary
    cd06943
    Location:112 → 315
    NR_LBD_RXR_like; The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily
    cd06956
    Location:9 → 91
    NR_DBD_RXR; DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers
Nucleotide Protein
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