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    PTPN11 protein tyrosine phosphatase, non-receptor type 11 [ Homo sapiens ]

    Gene ID: 5781, updated on 25-May-2012

    Summary

    Official Symbol
    PTPN11provided by HGNC
    Official Full Name
    protein tyrosine phosphatase, non-receptor type 11provided by HGNC
    Primary source
    HGNC:9644
    See related
    Ensembl:ENSG00000179295; HPRD:01470; MIM:176876; Vega:OTTHUMG00000134334
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CFC; NS1; SHP2; BPTP3; PTP2C; PTP-1D; SH-PTP2; SH-PTP3; MGC14433
    Summary
    The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains two tandem Src homology-2 domains, which function as phospho-tyrosine binding domains and mediate the interaction of this PTP with its substrates. This PTP is widely expressed in most tissues and plays a regulatory role in various cell signaling events that are important for a diversity of cell functions, such as mitogenic activation, metabolic control, transcription regulation, and cell migration. Mutations in this gene are a cause of Noonan syndrome as well as acute myeloid leukemia. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

    Genomic context

    Location :
    12q24
    Sequence :
    Chromosome: 12; NC_000012.11 (112856536..112947717)
    See PTPN11 in Epigenomics, MapViewer

    Chromosome 12 - NC_000012.11Genomic Context describing neighboring genes Neighboring gene chromosome 12 open reading frame 51 Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 2 pseudogene Neighboring gene ribosomal protein L6 Neighboring gene microRNA 1302-1 Neighboring gene rabphilin 3A homolog (mouse)

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.

    Four novel Loci (19q13, 6q24, 12q24, and 5q14) influence the microcirculation in vivo.

    Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.

    LEOPARD syndrome 1

    Leukemia, juvenile myelomonocytic

    Meta-analysis of genome-wide association studies identifies common variants associated with blood pressure variation in east Asians.

    Metachondromatosis

    Noonan syndrome 1

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Noonan syndrome (NS) is characterized by short stature, congenital heart defect, and developmental delay of variable degree. Other findings can include broad or webbed neck, unusual chest shape with superior pectus carinatum and inferior pectus excavatum, cryptorchidism, characteristic facies, varied coagulation defects, lymphatic dysplasias, and ocular abnormalities. Although birth length is usually normal, final adult height approaches the lower limit of normal. Congenital heart disease occurs in 50%-80% of individuals. Pulmonary valve stenosis, often with dysplasia, is the most common heart defect and is found in 20%-50% of individuals. Hypertrophic cardiomyopathy, found in 20%-30% of individuals, may be present at birth or develop in infancy or childhood. Other structural defects include atrial and ventricular septal defects, branch pulmonary artery stenosis, and tetralogy of Fallot. Up to one third of affected individuals have mild intellectual disability.
    Diagnosis Testing
    NS is diagnosed on clinical grounds by observation of key features. Affected individuals have normal chromosome studies. Molecular genetic testing identifies a mutation in PTPN11 in 50% of affected individuals, SOS1 in approximately 13%, RAF1 in 3% to 17%, and KRAS in fewer than 5%. Other genes in which mutations have been reported to cause Noonan syndrome in fewer than 1% of cases include NRAS, BRAF, and MAP2K1.
    Genetic Counseling
    NS is inherited in an autosomal dominant manner. Although many individuals with NS have a de novo mutation, an affected parent is recognized in 30%-75% of families. The risk to sibs of a proband depends on the genetic status of the parents. If a parent is affected, the risk is 50%. When the parents are clinically unaffected, the risk to the sibs of a proband appears to be low (<1%). Each child of an individual with Noonan syndrome has a 50% chance of inheriting the mutation. Prenatal testing is possible if the disease-causing allele has been identified in an affected family member.
    References

    Noonan-like/multiple giant cell lesion syndrome

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env HCV-E2 and HIV-gp120 act collaboratively to trigger a specific set of downstream signaling pathways that include activation of p38 mitogen-activated protein (MAP) kinase and the tyrosine phosphatase, SHP2, in hepatocytes PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_002825.3 AAA35594.1 BCR    BIND  PubMed Phosphorylated p210bcr-abl interacts with phosphorylated Syp. This interaction was modeled on a demonstrated interaction between human p210bcr-abl and mouse Syp. 
    NP_002825.3 NP_001743.1 CAT    BIND  PubMed Cat interacts with Shp-2. 
    NP_002825.3 NP_001744.2 CAV1    BIND  PubMed caveolin-1 interacts with SH-PTP2. 
    NP_002825.3 NP_002010.1 FLT1    BIND  PubMed Flt-1 interacts with the amino terminal SH2 domain of SHP-2. 
    NP_002825.3 NP_002030.2 GAB1    BIND  PubMed SHP2 interacts with and dephosphorylates Gab1. 
    NP_002825.3 NP_002077.1 GRB2    BIND  PubMed Grb2 interacts with Syp via Syp SH2 domains. 
    NP_002825.3 NP_000213.1 KIT    BIND  PubMed Syp interacts with c-Kit via its SH2 domain. 
    NP_002825.3 NP_002600.1 PDGFRB    BIND  PubMed Autophosphorylated PDGFR interacts with Syp. This interaction was modelled on a demonstrated interaction between human PDGFR and Syp from an unspecified species. 
    NP_002825.3 NP_002600.1 PDGFRB    BIND  PubMed PDGFR interacts with Syp. 
    NP_002825.3 NP_003028.1 SLAMF1    BIND  PubMed CD150 interacts with SHP-2. This interaction was modelled on a demonstrated interaction between human CD150 and monkey SHP-2. 
    NP_002825.3 NP_223213.1 cagA    BIND  PubMed SHP-2 interacts with CagA. 
    Q06124 O43707 ACTN4    HPRD  PubMed  
    Q06124 Q07960 ARHGAP1    HPRD  PubMed  
    Q06124 P30530 AXL    HPRD  PubMed  
    Q06124 P11274 BCR    HPRD  PubMed  
    Q06124 P30411 BDKRB2    HPRD  PubMed  
    Q06124 Q7Z6A9 BTLA    HPRD  PubMed  
    Q06124 O95866 C6orf25    HPRD  PubMed  
    Q06124 P04040 CAT    HPRD  PubMed  
    Q06124 Q03135 CAV1    HPRD  PubMed  
    Q06124 P22681 CBL    HPRD  PubMed  
    Q06124 P32239 CCKBR    HPRD  PubMed  
    Q06124 P20138 CD33    HPRD  PubMed  
    Q06124 P33151 CDH5    HPRD  PubMed  
    Q06124 P13688 CEACAM1    HPRD  PubMed  
    Q06124 O15111 CHUK    HPRD  PubMed  
    Q06124 P46109 CRKL    HPRD  PubMed  
    Q06124 P32927 CSF2RB    HPRD  PubMed  
    Q06124 Q99062 CSF3R    HPRD  PubMed  
    Q06124 P16410 CTLA4    HPRD  PubMed  
    Q06124 P61073 CXCR4    HPRD  PubMed  
    Q06124 O75553 DAB1    HPRD  PubMed  
    Q06124 Q08345 DDR1    HPRD  PubMed  
    Q06124 P00533 EGFR    HPRD  PubMed  
    Q06124 P29317 EPHA2    HPRD  PubMed  
    Q06124 P19235 EPOR    HPRD  PubMed  
    Q06124 P04626 ERBB2    HPRD  PubMed  
    Q06124 P17948 FLT1    HPRD  PubMed  
    Q06124 P35916 FLT4    HPRD  PubMed  
    Q06124 Q8WU20 FRS2    HPRD  PubMed  
    Q06124 O43559 FRS3    HPRD  PubMed  
    Q06124 P06241 FYN    HPRD  PubMed  
    Q06124 Q13480 GAB1    HPRD  PubMed  
    Q06124 Q9UQC2 GAB2    HPRD  PubMed  
    Q06124 GRB2 associated binding protein 3 GAB3    HPRD  PubMed  
    Q06124 P10912 GHR    HPRD  PubMed  
    Q06124 P62993 GRB2    HPRD  PubMed  
    Q06124 Q13224 GRIN2B    HPRD  PubMed  
    Q06124 Q00839 HNRNPU    HPRD  PubMed  
    Q06124 P17181 IFNAR1    HPRD  PubMed  
    Q06124 P15260 IFNGR1    HPRD  PubMed  
    Q06124 P08069 IGF1R    HPRD  PubMed  
    Q06124 P24394 IL4R    HPRD  PubMed  
    Q06124 P40189 IL6ST    HPRD  PubMed  
    Q06124 O00145 INPP5D    HPRD  PubMed  
    Q06124 P06213 INSR    HPRD  PubMed  
    Q06124 P35568 IRS1    HPRD  PubMed  
    Q06124 Q9Y4H2 IRS2    HPRD  PubMed  
    Q06124 Insulin receptor substrate 4 IRS4    HPRD  PubMed  
    Q06124 P23458 JAK1    HPRD  PubMed  
    Q06124 O60674 JAK2    HPRD  PubMed  
    Q06124 P35968 KDR    HPRD  PubMed  
    Q06124 KIR2DL5 KIR2DL5A    HPRD  PubMed  
    Q06124 P10721 KIT    HPRD  PubMed  
    Q06124 P26715 KLRC1    HPRD  PubMed  
    Q06124 Q6GTX8 LAIR1    HPRD  PubMed  
    Q06124 P06239 LCK    HPRD  PubMed  
    Q06124 P48357 LEPR    HPRD  PubMed  
    Q06124 P42702 LIFR    HPRD  PubMed  
    Q06124 Q8NHJ6 LILRB4    HPRD  PubMed  
    Q06124 Q9Y6R4 MAP3K4    HPRD  PubMed  
    Q06124 P27361 MAPK3    HPRD  PubMed  
    Q06124 P08581 MET    HPRD  PubMed  
    Q06124 P40238 MPL    HPRD  PubMed  
    Q06124 O95297 MPZL1    HPRD  PubMed  
    Q06124 Q01362 MS4A2    HPRD  PubMed  
    Q06124 Q14764 MVP    HPRD  PubMed  
    Q06124 Q14511 NEDD9    HPRD  PubMed  
    Q06124 P04629 NTRK1    HPRD  PubMed  
    Q06124 Q16620 NTRK2    HPRD  PubMed  
    Q06124 Q9NWQ8 PAG1    HPRD  PubMed  
    Q06124 P16234 PDGFRA    HPRD  PubMed  
    Q06124 P09619 PDGFRB    HPRD  PubMed  
    Q06124 P16284 PECAM1    HPRD  PubMed  
    Q06124 P48736 PIK3CG    HPRD  PubMed  
    Q06124 P27986 PIK3R1    HPRD  PubMed  
    Q06124 Q9UKJ1 PILRA    HPRD  PubMed  
    Q06124 Paired immunoglobulin like type 2 receptor beta PILRB    HPRD  PubMed  
    Q06124 P19174 PLCG1    HPRD  PubMed  
    Q06124 P17252 PRKCA    HPRD  PubMed  
    Q06124 P05771 PRKCB    HPRD  PubMed  
    Q06124 P24723 PRKCH    HPRD  PubMed  
    Q06124 P16471 PRLR    HPRD  PubMed  
    Q06124 Q05397 PTK2    HPRD  PubMed  
    Q06124 Q14289 PTK2B    HPRD  PubMed  
    Q06124 P29350 PTPN6    HPRD  PubMed  
    Q06124 P49023 PXN    HPRD  PubMed  
    Q06124 P07949 RET    HPRD  PubMed  
    Q06124 P16581 SELE    HPRD  PubMed  
    Q06124 P29353 SHC1    HPRD  PubMed  
    Q06124 Q96RL6 SIGLEC11    HPRD  PubMed  
    Q06124 Q96PQ1 SIGLEC12    HPRD  PubMed  
    Q06124 Q9Y286 SIGLEC7    HPRD  PubMed  
    Q06124 P78324 SIRPA    HPRD  PubMed  
    Q06124 Q9Y3P8 SIT1    HPRD  PubMed  
    Q06124 Q13291 SLAMF1    HPRD  PubMed  
    Q06124 Q96DU3 SLAMF6    HPRD  PubMed  
    Q06124 O14543 SOCS3    HPRD  PubMed  
    Q06124 Q07889 SOS1    HPRD  PubMed  
    Q06124 O43597 SPRY2    HPRD  PubMed  
    Q06124 P12931 SRC    HPRD  PubMed  
    Q06124 P42224 STAT1    HPRD  PubMed  
    Q06124 P40763 STAT3    HPRD  PubMed  
    Q06124 P42229 STAT5A    HPRD  PubMed  
    Q06124 P51692 STAT5B    HPRD  PubMed  
    Q06124 Q02763 TEK    HPRD  PubMed  
    Q06124 P35590 TIE1    HPRD  PubMed  
    Q06124 P19438 TNFRSF1A    HPRD  PubMed  
    Q06124 Q86YW5 TREML1    HPRD  PubMed  
    BioGRID:111745 BioGRID:114934 BCAR1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:127411 BTLA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:123283 C6orf25    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107305 CAV1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107315 CBL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107383 CD33    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:114359 CD84    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107438 CDH5    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107103 CEACAM1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:107789 CRKL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:107826 CSF2RB    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:107828 CSF3R    BioGRID  PubMed Far Western 
    BioGRID:111745 BioGRID:107880 CTNNB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:201792 Cd244    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108276 EGFR    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:111745 BioGRID:108288 EPHA2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108371 EPOR    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108376 ERBB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111745 BioGRID:108378 ERBB4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111745 BioGRID:108507 FCGR2B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:125428 FCRL3    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111745 BioGRID:116031 FRS2    BioGRID  PubMed Affinity Capture-Western; Far Western; Two-hybrid 
    BioGRID:111745 BioGRID:108810 FYN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108824 GAB1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:111745 BioGRID:115181 GAB2    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:111745 BioGRID:126581 GAB3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108957 GHR    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111745 BioGRID:109142 GRB2    BioGRID  PubMed Affinity Capture-Western; Far Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:199794 Gab2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:109701 IGF1R    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:109780 IL4R    BioGRID  PubMed Reconstituted Complex 
    BioGRID:111745 BioGRID:109786 IL6ST    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:109847 INPP5D    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:109854 INSR    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:109874 IRS1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:114209 IRS2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:200643 Il6st    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:109919 JAK1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:111745 BioGRID:109920 JAK2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:111745 BioGRID:110015 KIT    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:110098 LAIR1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:116197 LILRB4    BioGRID  PubMed Protein-peptide 
    BioGRID:111745 BioGRID:110241 LY9    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:114486 MPZL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:111185 PDGFRB    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:111745 BioGRID:111201 PECAM1    BioGRID  PubMed Affinity Capture-Western; Far Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:111313 PIK3R1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:119017 PILRA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:111352 PLCG2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:111603 PRLR    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:111719 PTK2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:108480 PTK2B    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Far Western 
    BioGRID:111745 BioGRID:111745 PTPN11    BioGRID  PubMed Two-hybrid 
    BioGRID:111745 BioGRID:112025 ROS1    BioGRID  PubMed Two-hybrid 
    BioGRID:111745 BioGRID:112301 SELE    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:125285 SIGLEC11    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:118088 SIT1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:112395 SLAMF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:125378 SLAMF6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:114203 SOCS1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:114488 SOCS3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:111745 BioGRID:112537 SOS1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:112651 STAT3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:112653 STAT5A    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:111745 BioGRID:112654 STAT5B    BioGRID  PubMed Biochemical Activity; Reconstituted Complex 
    BioGRID:111745 BioGRID:115755 SYNCRIP    BioGRID  PubMed Two-hybrid 
    BioGRID:111745 BioGRID:131013 TREML1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:111745 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Adaptive Immune System, organism-specific biosystem (from REACTOME)
      Adaptive Immune System, organism-specific biosystemAdaptive immunity refers to antigen-specific immune response efficiently involved in clearing the pathogens. The adaptive immune system is comprised of B and T lymphocytes that express receptors with...
    • Adipocytokine signaling pathway, organism-specific biosystem (from KEGG)
      Adipocytokine signaling pathway, organism-specific biosystemIncreased adipocyte volume and number are positively correlated with leptin production, and negatively correlated with production of adiponectin. Leptin is an important regulator of energy intake and...
    • Adipocytokine signaling pathway, conserved biosystem (from KEGG)
      Adipocytokine signaling pathway, conserved biosystemIncreased adipocyte volume and number are positively correlated with leptin production, and negatively correlated with production of adiponectin. Leptin is an important regulator of energy intake and...
    • Angiopoietin receptor Tie2-mediated signaling, organism-specific biosystem (from Pathway Interaction Database)
      Angiopoietin receptor Tie2-mediated signaling, organism-specific biosystem
      Angiopoietin receptor Tie2-mediated signaling
    • Axon guidance, organism-specific biosystem (from REACTOME)
      Axon guidance, organism-specific biosystemAxon guidance / axon pathfinding is the process by which neurons send out axons to reach the correct targets. Growing axons have a highly motile structure at the growing tip called the growth cone, w...
    • B Cell Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      B Cell Receptor Signaling Pathway, organism-specific biosystemThe B cell receptor includes membrane ?? heavy chain molecules bound to a light chain and an Ig alpha (CD79A)/Ig beta (CD79B) heterodimer. Activation of the B cell receptor involves phosphorylation o...
    • CTLA4 inhibitory signaling, organism-specific biosystem (from REACTOME)
      CTLA4 inhibitory signaling, organism-specific biosystemCTLA4 is one of the best studied inhibitory receptors of the CD28 superfamily. CTLA4 inhibits Tcell activation by reducing IL2 production and IL2 expression, and by arresting T cells at the G1 phase ...
    • CXCR4-mediated signaling events, organism-specific biosystem (from Pathway Interaction Database)
      CXCR4-mediated signaling events, organism-specific biosystem
      CXCR4-mediated signaling events
    • Cell surface interactions at the vascular wall, organism-specific biosystem (from REACTOME)
      Cell surface interactions at the vascular wall, organism-specific biosystemLeukocyte extravasation is a rigorously controlled process that guides white cell movement from the vascular lumen to sites of tissue inflammation. The powerful adhesive interactions that are require...
    • Cell-Cell communication, organism-specific biosystem (from REACTOME)
      Cell-Cell communication, organism-specific biosystemCell-to-Cell communication is crucial for multicellular organisms because it allows organisms to coordinate the activity of their cells. Some cell-to-cell communication requires direct cell-cell cont...
    • Chronic myeloid leukemia, organism-specific biosystem (from KEGG)
      Chronic myeloid leukemia, organism-specific biosystemChronic myelogenous leukemia (CML) originates in a pluripotent hematopoetic stem cell of the bone marrow and is characterized by greatly increased numbers of granulocytes in the blood. Myeloid and ot...
    • Chronic myeloid leukemia, conserved biosystem (from KEGG)
      Chronic myeloid leukemia, conserved biosystemChronic myelogenous leukemia (CML) originates in a pluripotent hematopoetic stem cell of the bone marrow and is characterized by greatly increased numbers of granulocytes in the blood. Myeloid and ot...
    • Costimulation by the CD28 family, organism-specific biosystem (from REACTOME)
      Costimulation by the CD28 family, organism-specific biosystemOptimal activation of T-lymphocytes requires at least two signals. A primary one is delivered by the T-cell receptor (TCR) complex after antigen recognition and additional costimulatory signals are d...
    • Cytokine Signaling in Immune system, organism-specific biosystem (from REACTOME)
      Cytokine Signaling in Immune system, organism-specific biosystemCytokines are small proteins that regulate and mediate immunity, inflammation, and hematopoiesis. They are secreted in response to immune stimuli, and usually act briefly, locally, at very low concen...
    • Developmental Biology, organism-specific biosystem (from REACTOME)
      Developmental Biology, organism-specific biosystemAs a first step towards capturing the array of processes by which a fertilized egg gives rise to the diverse tissues of the body, examples of three kinds of processes have been annotated. These are a...
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • Downstream signal transduction, organism-specific biosystem (from REACTOME)
      Downstream signal transduction, organism-specific biosystemThe role of autophosphorylation sites on PDGF receptors are to provide docking sites for downstream signal transduction molecules which contain SH2 domains. The SH2 domain is a conserved motif of aro...
    • Downstream signaling of activated FGFR, organism-specific biosystem (from REACTOME)
      Downstream signaling of activated FGFR, organism-specific biosystemSignaling via FGFRs is mediated via direct recruitment of signaling proteins that bind to tyrosine auto-phosphorylation sites on the activated receptor and via closely linked docking proteins that be...
    • EGF receptor (ErbB1) signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
      EGF receptor (ErbB1) signaling pathway, organism-specific biosystem
      EGF receptor (ErbB1) signaling pathway
    • EGFR1 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      EGFR1 Signaling Pathway, organism-specific biosystemThe androgen receptor is a member of the nuclear receptor family of ligand activated transcription factors. These receptors bind to steroid hormones, thyroid hormone, retinoids and vitamin D among ot...
    • EPO signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
      EPO signaling pathway, organism-specific biosystem
      EPO signaling pathway
    • Epithelial cell signaling in Helicobacter pylori infection, organism-specific biosystem (from KEGG)
      Epithelial cell signaling in Helicobacter pylori infection, organism-specific biosystemTwo major virulence factors of H. pylori are the vacuolating cytotoxin (VacA) and the cag type-IV secretion system (T4SS) and its translocated effector protein, cytotoxin-associated antigen A (CagA)....
    • Epithelial cell signaling in Helicobacter pylori infection, conserved biosystem (from KEGG)
      Epithelial cell signaling in Helicobacter pylori infection, conserved biosystemTwo major virulence factors of H. pylori are the vacuolating cytotoxin (VacA) and the cag type-IV secretion system (T4SS) and its translocated effector protein, cytotoxin-associated antigen A (CagA)....
    • ErbB2/ErbB3 signaling events, organism-specific biosystem (from Pathway Interaction Database)
      ErbB2/ErbB3 signaling events, organism-specific biosystem
      ErbB2/ErbB3 signaling events
    • FGF signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
      FGF signaling pathway, organism-specific biosystem
      FGF signaling pathway
    • FRS2-mediated cascade, organism-specific biosystem (from REACTOME)
      FRS2-mediated cascade, organism-specific biosystemThe FRS family of scaffolding adaptor proteins has two members, FRS2alpha and FRS2beta (also known as FRS3 or SNT-2). Activation of FGFR tyrosine kinase allows FRS2 proteins to become phosphorylated...
    • Fc-epsilon receptor I signaling in mast cells, organism-specific biosystem (from Pathway Interaction Database)
      Fc-epsilon receptor I signaling in mast cells, organism-specific biosystem
      Fc-epsilon receptor I signaling in mast cells
    • GAB1 signalosome, organism-specific biosystem (from REACTOME)
      GAB1 signalosome, organism-specific biosystemGAB1 is recruited to the activated EGFR indirectly, through GRB2. GAB1 acts as an adaptor protein that enables formation of an active PIK3, through recruitment of PIK3 regulatory subunit PIK3R1 (also...
    • Heart Development, organism-specific biosystem (from WikiPathways)
      Heart Development, organism-specific biosystemThis pathway has been largely adapted from an article by Deepak Srivastava, Cell. 2006 Sep 22;126(6):1037-48. In this pathway are known transcription factors, miRNAs and regulatory proteins that impa...
    • Hemostasis, organism-specific biosystem (from REACTOME)
      Hemostasis, organism-specific biosystemHemostasis is a physiological response that culminates in the arrest of bleeding from an injured vessel. Under normal conditions the vascular endothelium supports vasodilation, inhibits platelet adhe...
    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • IFN-gamma pathway, organism-specific biosystem (from Pathway Interaction Database)
      IFN-gamma pathway, organism-specific biosystem
      IFN-gamma pathway
    • IGF1 pathway, organism-specific biosystem (from Pathway Interaction Database)
      IGF1 pathway, organism-specific biosystem
      IGF1 pathway
    • IL-2 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-2 Signaling Pathway, organism-specific biosystemInterleukin-2 belongs to a family of cytokines, which includes IL-4, IL-7, IL-9, IL-15 and IL-21. IL-2 signals through a receptor complex consisting of IL-2 specific IL-2 receptor alpha (CD25), IL-2 ...
    • IL-3 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-3 Signaling Pathway, organism-specific biosystemInterleukin-3 belongs to a family of cytokines, which includes IL-5 and GM-CSF. It signals through a receptor complex comprising of an IL-3 specific IL-3 receptor alpha subunit (IL3RA) and a common b...
    • IL-4 signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-4 signaling Pathway, organism-specific biosystemInterleukin-4 belongs to the IL-2 family of cytokines, which includes IL-2, IL-7, IL-9, IL-15 and IL-21. It signals through 2 different receptor complexes; Receptor complex 1 comprises of IL-4 recept...
    • IL-5 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-5 Signaling Pathway, organism-specific biosystemInterleukin-5 belongs to the family of cytokines, which includes IL-3 and GM-CSF. It signals through a receptor complex comprising of an IL-5 receptor alpha subunit (IL5RA), and a common beta chain w...
    • IL-6 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-6 Signaling Pathway, organism-specific biosystemInterleukin-6 belongs to a family of cytokines which includes IL-11, ciliary neurotrophic factor (CNTF), cardiotropin-1, cardiotrophin-like cytokine, leukemia inhibitory factor (LIF) and Oncostatin M...
    • IL-9 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      IL-9 Signaling Pathway, organism-specific biosystemInterleukin-9 belongs to a family of cytokines, which includes IL-2, IL-4, IL-7, IL-15 and IL-21. It signals through a receptor complex consisting of an IL-9 receptor (IL9R) and a common gamma chain ...
    • IL2 signaling events mediated by PI3K, organism-specific biosystem (from Pathway Interaction Database)
      IL2 signaling events mediated by PI3K, organism-specific biosystem
      IL2 signaling events mediated by PI3K
    • IL2 signaling events mediated by STAT5, organism-specific biosystem (from Pathway Interaction Database)
      IL2 signaling events mediated by STAT5, organism-specific biosystem
      IL2 signaling events mediated by STAT5
    • IL2-mediated signaling events, organism-specific biosystem (from Pathway Interaction Database)
      IL2-mediated signaling events, organism-specific biosystem
      IL2-mediated signaling events
    • IL6-mediated signaling events, organism-specific biosystem (from Pathway Interaction Database)
      IL6-mediated signaling events, organism-specific biosystem
      IL6-mediated signaling events
    • IRS-mediated signalling, organism-specific biosystem (from REACTOME)
      IRS-mediated signalling, organism-specific biosystemRelease of phospho-IRS from the insulin receptor triggers a cascade of signalling events via PI3K, SOS, RAF and the MAP kinases.
    • IRS-related events, organism-specific biosystem (from REACTOME)
      IRS-related events, organism-specific biosystemIRS is one of the mediators of insulin signalling events. It is activated by phosphorylation and triggers a cascade of events involving PI3K, SOS, RAF and the MAP kinases. The proteins mentioned unde...
    • Immune System, organism-specific biosystem (from REACTOME)
      Immune System, organism-specific biosystemHumans are exposed to millions of potential pathogens daily, through contact, ingestion, and inhalation. Our ability to avoid infection depends on the adaptive immune system and during the first crit...
    • Insulin Pathway, organism-specific biosystem (from Pathway Interaction Database)
      Insulin Pathway, organism-specific biosystem
      Insulin Pathway
    • Insulin Signaling, organism-specific biosystem (from WikiPathways)
      Insulin Signaling, organism-specific biosystem
      Insulin Signaling
    • Insulin receptor signalling cascade, organism-specific biosystem (from REACTOME)
      Insulin receptor signalling cascade, organism-specific biosystemAutophosphorylation of the insulin receptor triggers a series of signalling events, mediated by SHC or IRS, and resulting in activation of the Ras/RAF and MAP kinase cascades. A second effect of the ...
    • Integrins in angiogenesis, organism-specific biosystem (from Pathway Interaction Database)
      Integrins in angiogenesis, organism-specific biosystem
      Integrins in angiogenesis
    • Interferon Signaling, organism-specific biosystem (from REACTOME)
      Interferon Signaling, organism-specific biosystemInterferons (IFNs) are cytokines that play a central role in initiating immune responses, especially antiviral and antitumor effects. There are three types of IFNs:Type I (IFN-alpha, -beta and others...
    • Interferon alpha/beta signaling, organism-specific biosystem (from REACTOME)
      Interferon alpha/beta signaling, organism-specific biosystemType I interferons (IFNs) are composed of various genes including IFN alpha (IFNA), beta (IFNB), omega, epsilon, and kappa. In humans the IFNA genes are composed of more than 13 subfamily genes, wher...
    • Interferon gamma signaling, organism-specific biosystem (from REACTOME)
      Interferon gamma signaling, organism-specific biosystemInterferon-gamma (IFN-gamma) belongs to the type II interferon family and is secreted by activated immune cells-primarily T and NK cells, but also B-cells and APC. INFG exerts its effect on cells by ...
    • Interleukin-3, 5 and GM-CSF signaling, organism-specific biosystem (from REACTOME)
      Interleukin-3, 5 and GM-CSF signaling, organism-specific biosystemThe Interleukin-3 (IL-3), IL-5 and Granulocyte-macrophage colony stimulating factor (GM-CSF) receptors form a family of heterodimeric receptors that have specific alpha chains but share a common beta...
    • Interleukin-6 signaling, organism-specific biosystem (from REACTOME)
      Interleukin-6 signaling, organism-specific biosystemInterleukin-6 (IL-6) is a pleiotropic cytokine with roles in processes including immune regulation, hematopoiesis, inflammation, oncogenesis, metabolic control and sleep. It is the founding member o...
    • Jak-STAT signaling pathway, organism-specific biosystem (from KEGG)
      Jak-STAT signaling pathway, organism-specific biosystemThe Janus kinase/signal transducers and activators of transcription (JAK/STAT) pathway is one of a handful of pleiotropic cascades used to transduce a multitude of signals for development and homeost...
    • Jak-STAT signaling pathway, conserved biosystem (from KEGG)
      Jak-STAT signaling pathway, conserved biosystemThe Janus kinase/signal transducers and activators of transcription (JAK/STAT) pathway is one of a handful of pleiotropic cascades used to transduce a multitude of signals for development and homeost...
    • Kit Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      Kit Receptor Signaling Pathway, organism-specific biosystemKit is a receptor protein tyrosine kinase, which is a receptor for stem cell factor or kit ligand. Signaling through Kit is important for formation of red cells, lymphocytes, mast cells and platelets...
    • Leukocyte transendothelial migration, organism-specific biosystem (from KEGG)
      Leukocyte transendothelial migration, organism-specific biosystemLeukocyte migaration from the blood into tissues is vital for immune surveillance and inflammation. During this diapedesis of leukocytes, the leukocytes bind to endothelial cell adhesion molecules (C...
    • Leukocyte transendothelial migration, conserved biosystem (from KEGG)
      Leukocyte transendothelial migration, conserved biosystemLeukocyte migaration from the blood into tissues is vital for immune surveillance and inflammation. During this diapedesis of leukocytes, the leukocytes bind to endothelial cell adhesion molecules (C...
    • Natural killer cell mediated cytotoxicity, organism-specific biosystem (from KEGG)
      Natural killer cell mediated cytotoxicity, organism-specific biosystemNatural killer (NK) cells are lymphocytes of the innate immune system that are involved in early defenses against both allogeneic (nonself) cells and autologous cells undergoing various forms of stre...
    • Natural killer cell mediated cytotoxicity, conserved biosystem (from KEGG)
      Natural killer cell mediated cytotoxicity, conserved biosystemNatural killer (NK) cells are lymphocytes of the innate immune system that are involved in early defenses against both allogeneic (nonself) cells and autologous cells undergoing various forms of stre...
    • Negative regulation of FGFR signaling, organism-specific biosystem (from REACTOME)
      Negative regulation of FGFR signaling, organism-specific biosystemOnce activated, the FGFR signaling pathway is regulated by numerous negative feedback mechanisms. These include downregulation of receptors through CBL-mediated ubiquitination and endocytosis, ERK-m...
    • Netrin mediated repulsion signals, organism-specific biosystem (from REACTOME)
      Netrin mediated repulsion signals, organism-specific biosystemUnc5 netrin receptors mediate repellent responses to netrin. Four Unc5 members have been found in humans: Unc5A, B, C and D. Different studies have suggested that long-range repulsion to netrin requi...
    • Netrin-1 signaling, organism-specific biosystem (from REACTOME)
      Netrin-1 signaling, organism-specific biosystemNetrins are secreted proteins that play a crucial role in neuronal migration and in axon guidance during the development of the nervous system. To date, several Netrins have been described in mouse a...
    • Neurotrophic factor-mediated Trk receptor signaling, organism-specific biosystem (from Pathway Interaction Database)
      Neurotrophic factor-mediated Trk receptor signaling, organism-specific biosystem
      Neurotrophic factor-mediated Trk receptor signaling
    • Neurotrophin signaling pathway, organism-specific biosystem (from KEGG)
      Neurotrophin signaling pathway, organism-specific biosystemNeurotrophins are a family of trophic factors involved in differentiation and survival of neural cells. The neurotrophin family consists of nerve growth factor (NGF), brain derived neurotrophic facto...
    • Neurotrophin signaling pathway, conserved biosystem (from KEGG)
      Neurotrophin signaling pathway, conserved biosystemNeurotrophins are a family of trophic factors involved in differentiation and survival of neural cells. The neurotrophin family consists of nerve growth factor (NGF), brain derived neurotrophic facto...
    • Nuclear signaling by ERBB4, organism-specific biosystem (from REACTOME)
      Nuclear signaling by ERBB4, organism-specific biosystemBesides signaling as a transmembrane receptor, ligand activated homodimers of ERBB4 JM-A isoforms (ERBB4 JM-A CYT1 and ERBB4 JM-A CYT2) undergo proteolytic cleavage by ADAM17 (TACE) in the juxtamembr...
    • PD-1 signaling, organism-specific biosystem (from REACTOME)
      PD-1 signaling, organism-specific biosystemThe Programmed cell death protein 1 (PD-1) is one of the negative regulators of TCR signaling. PD-1 may exert its effects on cell differentiation and survival directly by inhibiting early activation ...
    • PDGFR-beta signaling pathway, organism-specific biosystem (from Pathway Interaction Database)
      PDGFR-beta signaling pathway, organism-specific biosystem
      PDGFR-beta signaling pathway
    • PECAM1 interactions, organism-specific biosystem (from REACTOME)
      PECAM1 interactions, organism-specific biosystemPECAM-1/CD31 is a member of the immunoglobulin superfamily (IgSF) and has been implicated to mediate the adhesion and trans-endothelial migration of T-lymphocytes into the vascular wall, T cell activ...
    • PI-3K cascade, organism-specific biosystem (from REACTOME)
      PI-3K cascade, organism-specific biosystemThe ability of growth factors to protect from apoptosis is primarily due to the activation of the AKT survival pathway. P-I-3-kinase dependent activation of PDK leads to the activation of AKT which i...
    • PI3K Cascade, organism-specific biosystem (from REACTOME)
      PI3K Cascade, organism-specific biosystem
      PI3K Cascade
    • Platelet homeostasis, organism-specific biosystem (from REACTOME)
      Platelet homeostasis, organism-specific biosystemUnder normal conditions the vascular endothelium supports vasodilation, inhibits platelet adhesion and activation, suppresses coagulation, enhances fibrin cleavage and is anti-inflammatory in charact...
    • Platelet sensitization by LDL, organism-specific biosystem (from REACTOME)
      Platelet sensitization by LDL, organism-specific biosystemPhysiological concentrations (1g/L) of Low density lipoprotein (LDL) enhance platelet aggregation responses initiated by thrombin, collagen, and ADP. This enhancement involves the rapid phosphorylati...
    • Prolactin receptor signaling, organism-specific biosystem (from REACTOME)
      Prolactin receptor signaling, organism-specific biosystemProlactin (PRL) is a hormone secreted mainly by the anterior pituitary gland. It was originally identified by its ability to stimulate the development of the mammary gland and lactation, but is now k...
    • Regulation of IFNA signaling, organism-specific biosystem (from REACTOME)
      Regulation of IFNA signaling, organism-specific biosystemThere are several proteins and mechanisms involved in controlling the extent of ligand stimulation of IFNA/B signaling. These mechanisms can effect every step of the IFNA/B cascade. Dephosphorylation...
    • Regulation of IFNG signaling, organism-specific biosystem (from REACTOME)
      Regulation of IFNG signaling, organism-specific biosystemAt least three different classes of negative regulators exist to control the extent of INFG stimulation and signaling. These include the feedback inhibitors belonging to protein family suppressors of...
    • Renal cell carcinoma, organism-specific biosystem (from KEGG)
      Renal cell carcinoma, organism-specific biosystemRenal cell cancer (RCC) accounts for ~3% of human malignancies and its incidence appears to be rising. Although most cases of RCC seem to occur sporadically, an inherited predisposition to renal canc...
    • Renal cell carcinoma, conserved biosystem (from KEGG)
      Renal cell carcinoma, conserved biosystemRenal cell cancer (RCC) accounts for ~3% of human malignancies and its incidence appears to be rising. Although most cases of RCC seem to occur sporadically, an inherited predisposition to renal canc...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signal regulatory protein (SIRP) family interactions, organism-specific biosystem (from REACTOME)
      Signal regulatory protein (SIRP) family interactions, organism-specific biosystemSignal regulatory protein (SIRP)alpha, also known as SHPS-1 or SIRPA or CD172a, is a transmembrane protein expressed mostly on myeloid cells. CD47, a widely expressed transmembrane protein, is a liga...
    • Signaling by EGFR, organism-specific biosystem (from REACTOME)
      Signaling by EGFR, organism-specific biosystemThe epidermal growth factor receptor (EGFR) is one member of the ERBB family of transmembrane glycoprotein tyrosine receptor kinases (RTK). Binding of EGFR to its ligands induces conformational chang...
    • Signaling by EGFR in Cancer, organism-specific biosystem (from REACTOME)
      Signaling by EGFR in Cancer, organism-specific biosystemThe pathway "Signaling by EGFR in Cancer" shows "Signaling by constitutively active EGFR" in parallel with "Signaling by EGFR". This allows users to compare signaling by constitutively active EGFR ca...
    • Signaling by ERBB4, organism-specific biosystem (from REACTOME)
      Signaling by ERBB4, organism-specific biosystemERBB4, also known as HER4, belongs to the ERBB family of receptors, which also includes ERBB1 (EGFR i.e. HER1), ERBB2 (HER2 i.e. NEU) and ERBB3 (HER3). Similar to EGFR, ERBB4 has an extracellular lig...
    • Signaling by FGFR, organism-specific biosystem (from REACTOME)
      Signaling by FGFR, organism-specific biosystemThe 22 members of the fibroblast growth factor (FGF) family of growth factors mediate their cellular responses by binding to and activating the different isoforms encoded by the four receptor tyrosin...
    • Signaling by Insulin receptor, organism-specific biosystem (from REACTOME)
      Signaling by Insulin receptor, organism-specific biosystemInsulin binding to its receptor results in receptor autophosphorylation on tyrosine residues and the tyrosine phosphorylation of insulin receptor substrates (e.g. IRS and Shc) by the insulin receptor...
    • Signaling by Interleukins, organism-specific biosystem (from REACTOME)
      Signaling by Interleukins, organism-specific biosystemInterleukins are low molecular weight proteins that bind to cell surface receptors and act in an autocrine and/or paracrine fashion. They were first identified as factors produced by leukocytes but a...
    • Signaling by PDGF, organism-specific biosystem (from REACTOME)
      Signaling by PDGF, organism-specific biosystemPlatelet-derived Growth Factor (PDGF) is a potent stimulator of growth and motility of connective tissue cells such as fibroblasts and smooth muscle cells as well as other cells such as capillary end...
    • Signaling by SCF-KIT, organism-specific biosystem (from REACTOME)
      Signaling by SCF-KIT, organism-specific biosystemStem cell factor (SCF) is a growth factor with membrane bound and soluble forms. It is expressed by fibroblasts and endothelial cells throughout the body, promoting proliferation, migration, survival...
    • Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met), organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met), organism-specific biosystem
      Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met)
    • Signaling events mediated by Stem cell factor receptor (c-Kit), organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by Stem cell factor receptor (c-Kit), organism-specific biosystem
      Signaling events mediated by Stem cell factor receptor (c-Kit)
    • Signaling events mediated by VEGFR1 and VEGFR2, organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by VEGFR1 and VEGFR2, organism-specific biosystem
      Signaling events mediated by VEGFR1 and VEGFR2
    • Signaling events regulated by Ret tyrosine kinase, organism-specific biosystem (from Pathway Interaction Database)
      Signaling events regulated by Ret tyrosine kinase, organism-specific biosystem
      Signaling events regulated by Ret tyrosine kinase
    • Signaling of Hepatocyte Growth Factor Receptor, organism-specific biosystem (from WikiPathways)
      Signaling of Hepatocyte Growth Factor Receptor, organism-specific biosystem
      Signaling of Hepatocyte Growth Factor Receptor
    • Spry regulation of FGF signaling, organism-specific biosystem (from REACTOME)
      Spry regulation of FGF signaling, organism-specific biosystemSprouty was initially characterized as a negative regulator of FGFR signaling in Drosophila. Human cells contain four genes encoding Sprouty proteins, of which Spry2 is the best studied and most wid...
    • T Cell Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      T Cell Receptor Signaling Pathway, organism-specific biosystem
      T Cell Receptor Signaling Pathway
    • TCR signaling in naive CD4+ T cells, organism-specific biosystem (from Pathway Interaction Database)
      TCR signaling in naive CD4+ T cells, organism-specific biosystem
      TCR signaling in naive CD4+ T cells
    • TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem"The Tumor Necrosis Factor alpha is a proinflammatory cytokine belonging to the TNF superfamily. It signals through 2 separate receptors - TNFRSF1A and TNFRSF1B, both members of the TNF receptor supe...
    • Tie2 Signaling, organism-specific biosystem (from REACTOME)
      Tie2 Signaling, organism-specific biosystemThe Tie2/Tek receptor tyrosine kinase plays a pivotal role in vascular and hematopoietic development and is expressed exclusively on endothelial lineage. Tie2 interacts with a group of ligands belong...
    • Type II interferon signaling (IFNG), organism-specific biosystem (from WikiPathways)
      Type II interferon signaling (IFNG), organism-specific biosystemAdapted from Raza et al. (2008). This pathway is initiated by IFNG binding to its receptor and a subsequent phosphorylation cascade involving a number of the JAK and STAT family of proteins. Several ...
    • VEGFR1 specific signals, organism-specific biosystem (from Pathway Interaction Database)
      VEGFR1 specific signals, organism-specific biosystem
      VEGFR1 specific signals

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    non-membrane spanning protein tyrosine phosphatase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    non-membrane spanning protein tyrosine phosphatase activity TAS
    Traceable Author Statement
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein tyrosine phosphatase activity TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    tyrosine-protein phosphatase non-receptor type 11
    Names
    tyrosine-protein phosphatase non-receptor type 11
    PTP-2C
    protein-tyrosine phosphatase 1D
    protein-tyrosine phosphatase 2C
    NP_002825.3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007459.1 RefSeqGene

      Range
      5001..96182
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_002834.3NP_002825.3  tyrosine-protein phosphatase non-receptor type 11 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC004216, AK289854, BF515187, BX537632, CN258646
      Consensus CDS
      CCDS9163.1
      UniProtKB/Swiss-Prot
      Q06124
      Related
      ENSP00000340944, OTTHUMP00000166107, ENST00000351677, OTTHUMT00000259496
      Conserved Domains (4) summary
      cd00047
      Location:276519
      Blast Score: 754
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      smart00194
      Location:246520
      Blast Score: 854
      PTPc; Protein tyrosine phosphatase, catalytic domain
      cd09931
      Location:111218
      Blast Score: 496
      SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd10340
      Location:5103
      Blast Score: 507
      SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
    2. NM_080601.1NP_542168.1  tyrosine-protein phosphatase non-receptor type 11 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      BC008692, BF515187
      Conserved Domains (3) summary
      cd00047
      Location:276459
      Blast Score: 588
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      cd09931
      Location:111218
      Blast Score: 495
      SH2_C-SH2_SHP_like; C-terminal Src homology 2 (C-SH2) domain found in SH2 domain Phosphatases (SHP) proteins
      cd10340
      Location:5103
      Blast Score: 506
      SH2_N-SH2_SHP_like; N-terminal Src homology 2 (N-SH2) domain found in SH2 domain Phosphatases (SHP) proteins

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000012.11 Reference GRCh37.p5 Primary Assembly

      Range
      112856536..112947717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000144.1 Alternate HuRef

      Range
      109868826..109960330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC004086.14 None
    genomic AC004216.1 (118291..179019) None
    genomic CH471054.1 EAW98011.1
      EAW98012.1
    mRNA AK289854.1 BAF82543.1
    mRNA AK312147.1 BAG35082.1
    mRNA AU123593.3 None
    mRNA BC007869.2 None
    mRNA BC008692.1 AAH08692.1
    mRNA BC025181.1 AAH25181.1
    mRNA BC030949.1 AAH30949.1
    mRNA BF515187.1 None
    mRNA BT007106.1 AAP35770.1
    mRNA BX537632.1 None
    mRNA CN258646.1 None
    mRNA D13540.1 BAA02740.2
    mRNA EU779706.1 ACE60554.1
    mRNA EU779707.1 ACE60555.1
    mRNA EU779708.1 ACE60556.1
    mRNA L03535.1 AAA36611.1
    mRNA L07527.1 AAA17022.1
    mRNA L08807.1 None
    mRNA S39383.1 None
    mRNA S78088.1 AAB21148.2
    mRNA U79291.1 None
    mRNA X70766.1 CAA50045.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q06124.2 GenPept UniProtKB/Swiss-Prot:Q06124
    Q16344 GenPept UniProtKB/TrEMBL:Q16344
    Q96I26 GenPept UniProtKB/TrEMBL:Q96I26

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