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Rpl35a ribosomal protein L35A [ Mus musculus (house mouse) ]

Gene ID: 57808, updated on 8-May-2016
Official Symbol
Rpl35aprovided by MGI
Official Full Name
ribosomal protein L35Aprovided by MGI
Primary source
MGI:MGI:1928894
See related
Ensembl:ENSMUSG00000060636 Vega:OTTMUSG00000024790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rpl35; 2810431L15Rik
Orthologs
Location:
16; 16 B3
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 16 NC_000082.6 (33056453..33060189)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (33056539..33060275)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 3 Neighboring gene predicted gene 6611 Neighboring gene IQ motif containing G Neighboring gene leishmanolysin-like (metallopeptidase M8 family) Neighboring gene microRNA 1947 Neighboring gene predicted gene, 38540

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
cytoplasmic translation IBA
Inferred from Biological aspect of Ancestor
more info
 
rRNA processing ISO
Inferred from Sequence Orthology
more info
 
ribosomal large subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
ribosomal large subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
cytosolic large ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130484.1NP_001123956.1  60S ribosomal protein L35a

    See identical proteins and their annotated locations for NP_001123956.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1.
    Source sequence(s)
    BB611247, CJ043213
    Consensus CDS
    CCDS28126.1
    UniProtKB/Swiss-Prot
    O55142
    UniProtKB/TrEMBL
    Q6ZWX1
    Related
    ENSMUSP00000110731, OTTMUSP00000029874, ENSMUST00000115079, OTTMUST00000061054
    Conserved Domains (1) summary
    pfam01247
    Location:5104
    Ribosomal_L35Ae; Ribosomal protein L35Ae
  2. NM_001130485.1NP_001123957.1  60S ribosomal protein L35a

    See identical proteins and their annotated locations for NP_001123957.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1.
    Source sequence(s)
    AK010692, BB611247, BU530423
    Consensus CDS
    CCDS28126.1
    UniProtKB/Swiss-Prot
    O55142
    UniProtKB/TrEMBL
    Q6ZWX1
    Related
    ENSMUSP00000077857, OTTMUSP00000029872, ENSMUST00000078804, OTTMUST00000061051
    Conserved Domains (1) summary
    pfam01247
    Location:5104
    Ribosomal_L35Ae; Ribosomal protein L35Ae
  3. NM_021338.3NP_067313.2  60S ribosomal protein L35a

    See identical proteins and their annotated locations for NP_067313.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK028214, AV486753, BB611247
    Consensus CDS
    CCDS28126.1
    UniProtKB/Swiss-Prot
    O55142
    UniProtKB/TrEMBL
    Q6ZWX1
    Related
    ENSMUSP00000110730, OTTMUSP00000029873, ENSMUST00000115078, OTTMUST00000061052
    Conserved Domains (1) summary
    pfam01247
    Location:5104
    Ribosomal_L35Ae; Ribosomal protein L35Ae

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p3 C57BL/6J

    Range
    33056453..33060189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000038.1 Alternate Mm_Celera

    Range
    33535865..33539595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)