RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_002830.2 → NP_002821.1 tyrosine-protein phosphatase non-receptor type 4
Status: REVIEWED
- Source sequence(s)
-
BC010674, M68941
- Consensus CDS
-
CCDS2129.1
- UniProtKB/Swiss-Prot
-
P29074
- Related
- ENSP00000263708, OTTHUMP00000162133, ENST00000263708, OTTHUMT00000254233
- Conserved Domains (8) summary
-
- cd00047
Location:682 – 909
Blast Score: 780
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:515 – 602
Blast Score: 196
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cd00836
Location:217 – 309
Blast Score: 351
- FERM_C; FERM_C domain
- pfam08736
Location:322 – 365
Blast Score: 150
- FA; FERM adjacent (FA)
- smart00194
Location:657 – 910
Blast Score: 852
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00295
Location:30 – 222
Blast Score: 571
- B41; Band 4.1 homologues
- pfam00373
Location:117 – 222
Blast Score: 322
- FERM_M; FERM central domain
- pfam09379
Location:33 – 111
Blast Score: 242
- FERM_N; FERM N-terminal domain
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000002.11 Reference GRCh37.p5 Primary Assembly
- Range
- 120517207..120735037
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000134.1 Alternate HuRef
- Range
- 112841586..113059439
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)