Display Settings:

Format

Send to:

Choose Destination

    WDR48 WD repeat domain 48 [ Homo sapiens ]

    Gene ID: 57599, updated on 11-May-2012

    Summary

    Official Symbol
    WDR48provided by HGNC
    Official Full Name
    WD repeat domain 48provided by HGNC
    Primary source
    HGNC:30914
    See related
    Ensembl:ENSG00000114742; HPRD:11146; MIM:612167; Vega:OTTHUMG00000155972
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    P80; UAF1; KIAA1449; DKFZp686G1794

    Genomic context

    Location :
    3p21.33
    Sequence :
    Chromosome: 3; NC_000003.11 (39093507..39137882)
    See WDR48 in Epigenomics, MapViewer

    Chromosome 3 - NC_000003.11Genomic Context describing neighboring genes Neighboring gene sodium channel, voltage-gated, type X, alpha subunit Neighboring gene sodium channel, voltage-gated, type XI, alpha subunit Neighboring gene golgi reassembly stacking protein 1, 65kDa Neighboring gene tetratricopeptide repeat domain 21A

    Genomic regions, transcripts, and products

    Bibliography

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:121649 BioGRID:115987 AHCYL1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:116958 AHCYL2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:117938 AP3M1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:114998 ARHGEF10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:122994 ATAD5    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:121649 BioGRID:107083 BCR    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:116850 BOP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:107140 BRCA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:116144 C11orf58    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115754 CRTAP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:107841 CSNK2A1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:107842 CSNK2A2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:107843 CSNK2B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:107881 CTNND1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:114028 CUL4B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:108080 DKC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:108102 DMWD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:114210 EIF3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:114214 EIF3F    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:114216 EIF3H    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:127730 FAM122B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:108474 FANCD2    BioGRID  PubMed Biochemical Activity 
    BioGRID:121649 BioGRID:120511 FANCI    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:121649 BioGRID:116452 GPN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:119359 GPN3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:120807 IWS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115035 KDM4A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:122098 LEPRE1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:116709 MYCBP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:124938 NAF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:120783 NHP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:120685 NOP10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:111142 PCNA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:121649 BioGRID:116843 PHLPP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:116674 PHLPP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:111432 POLR2G    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:111434 POLR2I    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:111475 PPIB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:120747 PPP1R9A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:124202 PPP1R9B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:111657 PSMA3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115492 PSME3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115879 RAD51AP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:113662 RDBP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:112316 SET    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:120464 SHQ1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:112670 STK11    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:112698 SUPT6H    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:112757 TARBP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:112809 TCOF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:113010 TP53    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:121918 TRMT11    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:119501 UBR5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:119697 UIMC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115759 UNC13B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:113241 USP1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-purification; Reconstituted Complex 
    BioGRID:121649 BioGRID:128522 USP12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:122327 USP46    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:124884 WDR20    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:121649 BioGRID:120410 WDR70    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:113323 WRN    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:121117 YLPM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:121667 ZBTB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:115327 ZBTB33    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121649 BioGRID:119367 ZNF639    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    • Homologs of the WDR48 gene: The WDR48 gene is conserved in chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, C.elegans, S.pombe, , N.crassa, A.thaliana, and rice.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
      Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Fanconi anemia pathway, conserved biosystem (from KEGG)
      Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    interspecies interaction between organisms IEA
    Inferred from Electronic Annotation
    more info
     
    protein deubiquitination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    WD repeat-containing protein 48
    Names
    WD repeat-containing protein 48
    USP1 associated factor 1
    USP1-associated factor 1
    WD repeat endosomal protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020839.2NP_065890.1  WD repeat-containing protein 48

      Status: PROVISIONAL

      Source sequence(s)
      BC026353
      Consensus CDS
      CCDS33738.1
      UniProtKB/Swiss-Prot
      Q8TAF3
      Related
      ENSP00000307491, OTTHUMP00000208993, ENST00000302313, OTTHUMT00000342529
      Conserved Domains (2) summary
      cd00200
      Location:30300
      Blast Score: 463
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam11816
      Location:366677
      Blast Score: 690
      DUF3337; Domain of unknown function (DUF3337)

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000003.11 Reference GRCh37.p5 Primary Assembly

      Range
      39093507..39137882
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000135.1 Alternate HuRef

      Range
      39135626..39179803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC123903.2 (159758..162350) None
    genomic AC138124.2 (2001..43783) None
    genomic CH471055.1 EAW64548.1
      EAW64549.1
      EAW64550.1
      EAW64551.1
    mRNA AB040882.2 BAA95973.2
    mRNA AF468833.1 AAL78650.1
    mRNA AK025513.1 None
    mRNA AK074278.1 None
    mRNA AK297349.1 BAG59798.1
    mRNA AK298810.1 BAG60944.1
    mRNA AK302307.1 BAG63646.1
    mRNA AL162064.1 CAB82402.1
    mRNA AL832926.1 CAH56300.1
    mRNA BC012861.1 None
    mRNA BC026353.1 AAH26353.1
    mRNA BC037168.2 AAH37168.1
    mRNA BX649170.1 CAH56182.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8TAF3.1 GenPept UniProtKB/Swiss-Prot:Q8TAF3

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...