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    CG17162 [ Drosophila melanogaster ]

    Gene ID: 5740457, updated on 8-Jan-2012
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    Summary

    Official Symbol
    CG17162provided by Flybase
    Primary source
    FLYBASE:FBgn0039944
    Locus tag
    Dmel_CG17162
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-20Ea; CG40460; Dmel\CG17162; FBgn0058460
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    Genomic context

    Location :
    20E-20E
    See CG17162 in MapViewer

    NW_001848859.1Genomic Context describing neighboring genes Neighboring gene CG17168 gene product from transcript CG17168-RA Neighboring gene CG17169 gene product from transcript CG17169-RB Neighboring gene CG17159 gene product from transcript CG17159-RF Neighboring gene suppressor of forked Neighboring gene (A+T)-stretch binding protein Neighboring gene ribosomal RNA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sequence finishing and mapping of Drosophila melanogaster heterochromatin. Hoskins RA, et al. Science, 2007 Jun 15. PMID 17569867.
    2. The Release 5.1 annotation of Drosophila melanogaster heterochromatin. Smith CD, et al. Science, 2007 Jun 15. PMID 17569856.
    3. Molecular characterization of embryonic gonads by gene expression profiling in Drosophila melanogaster. Shigenobu S, et al. Proc Natl Acad Sci U S A, 2006 Sep 12. PMID 16950879.
    4. Combined evidence annotation of transposable elements in genome sequences. Quesneville H, et al. PLoS Comput Biol, 2005 Jul. PMID 16110336.
    5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:625088 BioGRID:67789 CG10694    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:66199 CG11753    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:57586 CG13362    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:66810 CG14840    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:64217 CG17744    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:72659 CG17776    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:58346 CG3099    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:57717 CG4194    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:68168 CG5984    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:66888 CG6904    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:67015 CG8927    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:68520 CanA1    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:59119 Frq2    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:67832 Golgin84    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:57914 HLH4C    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:58962 Pp2B-14D    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:64269 Rac2    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:64525 SH3PX1    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:61570 blow    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:61001 grp    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:67475 slmb    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:77769 squ    BioGRID  PubMed Two-hybrid 
    BioGRID:625088 BioGRID:67179 tinc    BioGRID  PubMed Two-hybrid 
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    General gene information

    • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
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    General protein information

    Preferred Names
    CG17162 gene product from transcript CG17162-RF
    Names
    CG17162
    CG17162-PB
    CG17162-PC
    CG17162-PD
    CG17162-PE
    CG17162-PF
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001848859.1

      Range
      64549..75553, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001144067.1 → NP_001137539.1  CG17162, isoform F [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    2. NM_001111001.2 → NP_001104471.1  CG17162, isoform D [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    3. NM_001111003.2 → NP_001104473.1  CG17162, isoform C [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    4. NM_001111002.2 → NP_001104472.1  CG17162, isoform E [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8

    5. NM_001111000.2 → NP_001104470.1  CG17162, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SYH8
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic CM000460.1 EDP28016.1
    genomic CM000460.1 EDP28015.1
    genomic CM000460.1 EDP28017.1
    genomic CM000460.1 EDP28018.1
    mRNA AY071535.1 AAL49157.1
    genomic CM000460.1 EED86092.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    EAA46181.2 GenPept
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    Additional Links

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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