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MmarC6_1685 DNA ligase I, ATP-dependent Dnl1 [ Methanococcus maripaludis C6 ]

Gene ID: 5737379, updated on 18-Oct-2014
Gene symbol
MmarC6_1685
Gene description
DNA ligase I, ATP-dependent Dnl1
Locus tag
MmarC6_1685
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Methanococcus maripaludis C6 (strain: C6)
Lineage
Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus
Sequence:
NC_009975.1 (1583851..1585572, complement)

NC_009975.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene adenylosuccinate lyase Neighboring gene hypothetical protein Neighboring gene histidinol dehydrogenase

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
DNA ligase I, ATP-dependent Dnl1
YP_001549729.1
  • KEGG: mvn:Mevan_0293 DNA ligase I, ATP-dependent Dnl1~TIGRFAM: DNA ligase I, ATP-dependent Dnl1~PFAM: DNA ligase domain protein; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009975.1 

    Range
    1583851..1585572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_001549729.1 DNA ligase I, ATP-dependent Dnl1 [Methanococcus maripaludis C6]

    See proteins identical to YP_001549729.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A9AAX4
    Conserved Domains (4) summary
    cd07901
    Location:222442
    Adenylation_DNA_ligase_Arch_LigB; Adenylation domain of archaeal and bacterial LigB-like DNA ligases
    TIGR00574
    Location:61567
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam04675
    Location:1180
    DNA_ligase_A_N; DNA ligase N terminus
    cl08424
    Location:444564
    OBF_DNA_ligase_family; The Oligonucleotide/oligosaccharide binding (OB)-fold domain is a DNA-binding module that is part of the catalytic core unit of ATP dependent DNA ligases