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    SEPN1 selenoprotein N, 1 [ Homo sapiens ]

    Gene ID: 57190, updated on 11-May-2012

    Summary

    Official Symbol
    SEPN1provided by HGNC
    Official Full Name
    selenoprotein N, 1provided by HGNC
    Primary source
    HGNC:15999
    See related
    Ensembl:ENSG00000162430; HPRD:05867; MIM:606210; Vega:OTTHUMG00000007375
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RSS; CFTD; SELN; MDRS1; RSMD1; FLJ24021
    Summary
    This gene encodes a selenoprotein, which contains a selenocysteine (Sec) residue at its active site. The selenocysteine is encoded by the UGA codon that normally signals translation termination. The 3' UTR of selenoprotein genes have a common stem-loop structure, the sec insertion sequence (SECIS), that is necessary for the recognition of UGA as a Sec codon rather than as a stop signal. Mutations in this gene cause the classical phenotype of multiminicore disease and congenital muscular dystrophy with spinal rigidity and restrictive respiratory syndrome. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    1p36.13
    Sequence :
    Chromosome: 1; NC_000001.10 (26126667..26144713)
    See SEPN1 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor adaptor protein 1 Neighboring gene mannosidase, alpha, class 1C, member 1 Neighboring gene uncharacterized LOC100507013 Neighboring gene uncharacterized LOC646471 Neighboring gene family with sequence similarity 54, member B Neighboring gene chromosome 1 open reading frame 135

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Muscular dystrophy, rigid spine, 1

    Myopathy, congenital, with fiber-type disproportion

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Congenital fiber-type disproportion (CFTD) is usually characterized by hypotonia and mild-to-severe generalized muscle weakness at birth or within the first year of life. Although some individuals remain non-ambulatory throughout life, many eventually develop the ability to walk. In more than 90% of affected individuals, muscle weakness is static or improves; in the remainder it is slowly progressive. Mild-to-severe respiratory involvement is seen in approximately 30% of affected individuals; respiratory failure may occur at any age. Ophthalmoplegia, ptosis, and facial and/or bulbar weakness with severe limb/respiratory weakness predict a poor prognosis. Mild-to-severe feeding difficulties occur in nearly 30% of children. Contractures of the hips, knees, ankles, elbows, and fingers occur in approximately 25% and are usually present at birth, but may occur in older persons with decreased mobility secondary to severe weakness. Spinal deformities including scoliosis, kyphoscoliosis, and lordosis are seen in approximately 25% of individuals.
    Diagnosis Testing
    Diagnosis is based on a combination of clinical presentation and morphologic features observed on skeletal muscle histology. The pathologic and clinical manifestations of CFTD overlap with other neuromuscular and non-neuromuscular diseases that must be ruled out prior to making a diagnosis of CFTD. To date, mutations have been identified in three genes, ACTA1 (~6% of individuals with CFTD), SEPN1 (rare), and TPM3 (~20% -25% of individuals with CFTD). Testing is clinically available for all three genes.
    Genetic Counseling
    CFTD is a genetically heterogenous condition that can be inherited in an autosomal recessive, autosomal dominant, or X-linked manner. To date, all identified cases of ACTA1-related CFTD have been caused by autosomal dominant mutations while the SEPN1-related cases have been associated with autosomal recessive mutations. Mutations in TPM3 are inherited in an autosomal dominant or autosomal recessive manner. A large portion of individuals with CFTD represent simplex cases (i.e., a single occurrence in a family). It can be difficult to determine inheritance pattern in the family of a simplex case when mutations in ACTA1, SEPN1 or TPM3 are not identified. Prenatal testing for pregnancies at risk for ACTA1-related CFTD, SEPN1-related CFTD and TPM3-related CFTD is available clinically if the disease-causing mutations in a family are known.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:121439 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Potential readthrough

    Included gene: FAM54B

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular region NAS
    Non-traceable Author Statement
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    selenoprotein N
    Names
    selenoprotein N

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009930.1 RefSeqGene

      Range
      5001..23047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_020451.2NP_065184.2  selenoprotein N isoform 1 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1), which contains two selenocysteine residues. This variant contains an Alu-derived exon.
      Source sequence(s)
      AA613025, AF166125, AJ306399, BC021028, BC042154, BQ217758
      Consensus CDS
      CCDS41282.1
      UniProtKB/Swiss-Prot
      Q9NZV5
      Related
      ENSP00000355141, OTTHUMP00000008506, ENST00000361547, OTTHUMT00000019314
      Conserved Domains (1) summary
      pfam13900
      Location:102123
      Blast Score: 101
      GVQW; Putative binding domain
    2. NM_206926.1NP_996809.1  selenoprotein N isoform 2 precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) represents the predominant transcript and is lacking an in-frame coding exon compared to transcript variant 1. The resulting shorter isoform (2) is thus missing an internal protein segment containing an additional selenocysteine residue compared to isoform 1.
      Source sequence(s)
      AA613025, AF166125, AJ306399, BC021028, BC042154, BQ217758
      Consensus CDS
      CCDS41283.1
      UniProtKB/Swiss-Prot
      Q9NZV5
      Related
      ENSP00000363434, OTTHUMP00000008507, ENST00000374315, OTTHUMT00000019315

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p5 Primary Assembly

      Range
      26126667..26144713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      24383830..24400647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AJ306398.1 CAC83790.1
    genomic AL020996.6 (21270..39316) None
    mRNA AA613025.1 None
    mRNA AF166125.1 AAF21430.1
    mRNA AJ306399.1 CAC83791.1
    mRNA AK172860.1 None
    mRNA AK308457.1 None
    mRNA AL110205.1 None
    mRNA BC005881.2 None
    mRNA BC015638.2 AAH15638.1
    mRNA BC021028.2 None
    mRNA BC033244.1 None
    mRNA BC042154.2 AAH42154.1
    mRNA BC107036.2 None
    mRNA BQ217758.1 None
    other-genetic BC156071.1 AAI56072.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NZV5.5 GenPept UniProtKB/Swiss-Prot:Q9NZV5

      Supplemental Content

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