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zgc:174877 zgc:174877 [ Danio rerio (zebrafish) ]

Gene ID: 570025, updated on 27-Mar-2024

Summary

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Official Symbol
zgc:174877provided by ZNC
Official Full Name
zgc:174877provided by ZNC
Primary source
ZFIN:ZDB-GENE-041008-66
See related
Ensembl:ENSDARG00000079278 AllianceGenome:ZFIN:ZDB-GENE-041008-66
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6912654
Summary
Predicted to be active in nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (6334372..6345749, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (6298849..6316427, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene myosin IIIA Neighboring gene uncharacterized LOC108181524 Neighboring gene tripartite motif-containing protein 16-like Neighboring gene annexin A13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC570025

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113619.1 → NP_001107091.1  uncharacterized protein LOC570025

    See identical proteins and their annotated locations for NP_001107091.1

    Status: PREDICTED

    Source sequence(s)
    BC154796
    UniProtKB/TrEMBL
    A8WGP9
    Related
    ENSDARP00000101594.2, ENSDART00000108994.3
    Conserved Domains (2) summary
    pfam15794
    Location:433 → 492
    CCDC106; Coiled-coil domain-containing protein 106
    cl00213
    Location:181 → 308
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    6334372..6345749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470211.1 → XP_021325886.1  uncharacterized protein LOC570025 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PU65
    Conserved Domains (2) summary
    pfam15794
    Location:436 → 481
    CCDC106; Coiled-coil domain-containing protein 106
    cl00213
    Location:184 → 311
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  2. XM_005162514.4 → XP_005162571.1  uncharacterized protein LOC570025 isoform X1

    See identical proteins and their annotated locations for XP_005162571.1

    UniProtKB/TrEMBL
    A0A8M2B9D4
    Conserved Domains (2) summary
    pfam15794
    Location:437 → 496
    CCDC106; Coiled-coil domain-containing protein 106
    cl00213
    Location:184 → 311
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

  3. XM_021470212.1 → XP_021325887.1  uncharacterized protein LOC570025 isoform X3

    UniProtKB/TrEMBL
    A0A8M9P5Y9
    Related
    ENSDARP00000143247.1, ENSDART00000178287.2
    Conserved Domains (2) summary
    pfam15794
    Location:437 → 482
    CCDC106; Coiled-coil domain-containing protein 106
    cl00213
    Location:184 → 311
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain

RNA

  1. XR_002456609.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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