prr13 proline rich 13 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: prr13provided by ZNC
Official Full Name: proline rich 13provided by ZNC
Primary source: ZFIN:ZDB-GENE-080709-1
See related: Ensembl:ENSDARG00000086216 AllianceGenome:ZFIN:ZDB-GENE-080709-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: gb:aw281193
Summary: Orthologous to human PRR13 (proline rich 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (13196..18340, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (13177..18307, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: proline rich 13; proline-rich protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386341.1 → NP_001373270.1 proline rich 13

Status: VALIDATED

Source sequence(s)

FP326665

UniProtKB/TrEMBL

A0A8M2BKJ9, E7F816

Conserved Domains (1) summary

TIGR01628
Location:21 → 95

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007122.7 Reference GRCz11 Primary Assembly

Range

13196..18340 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005172756.3 → XP_005172813.1 proline-rich protein 13 isoform X1

UniProtKB/TrEMBL

E7F816

Related

ENSDARP00000132088.1, ENSDART00000172050.1

Conserved Domains (1) summary

TIGR01628
Location:21 → 95

PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
XM_021479672.1 → XP_021335347.1 proline-rich protein 13 isoform X2

UniProtKB/TrEMBL

A0A8M9PV28

Conserved Domains (1) summary

cl25887
Location:21 → 95

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]