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LOC568392 cadherin-1-like [ Danio rerio (zebrafish) ]

Gene ID: 568392, updated on 27-Mar-2024

Summary

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Gene symbol
LOC568392
Gene description
cadherin-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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Genomic context

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See LOC568392 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (53151512..53161169)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (52882230..52891511)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene cadherin 1, type 1, E-cadherin (epithelial) Neighboring gene uncharacterized LOC108190717 Neighboring gene si:busm1-71b9.3 Neighboring gene cadherin 28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cadherin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    53151512..53161169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017357098.2 → XP_017212587.1  cadherin-1-like isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z7E2

  2. XM_691716.8 → XP_696808.4  cadherin-1-like isoform X1

    UniProtKB/TrEMBL
    A0A8N7T8E0
    Conserved Domains (3) summary
    cd11304
    Location:272 → 377
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08758
    Location:26 → 115
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:507 → 607
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

RNA

  1. XR_002459294.1 RNA Sequence

  2. XR_002459295.1 RNA Sequence

  3. XR_223891.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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