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Lgi1 leucine-rich repeat LGI family, member 1 [ Mus musculus (house mouse) ]

Gene ID: 56839, updated on 8-May-2016
Official Symbol
Lgi1provided by MGI
Official Full Name
leucine-rich repeat LGI family, member 1provided by MGI
Primary source
MGI:MGI:1861691
See related
Ensembl:ENSMUSG00000067242
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BB130740
Orthologs
Location:
19; 19 C3
Exon count:
8
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 19 NC_000085.6 (38264782..38308939)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (38339272..38383429)

Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene FRA10AC1 homolog (human) Neighboring gene predicted gene, 32574 Neighboring gene predicted gene, 32491 Neighboring gene predicted gene, 32771 Neighboring gene uncharacterized LOC105246571 Neighboring gene predicted gene, 32960

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
axon guidance ISO
Inferred from Sequence Orthology
more info
 
neuron projection development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
positive regulation of synaptic transmission ISO
Inferred from Sequence Orthology
more info
 
protein homooligomerization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cell junction IEA
Inferred from Electronic Annotation
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
leucine-rich glioma-inactivated protein 1
Names
leucine-rich, glioma inactivated 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020278.2NP_064674.1  leucine-rich glioma-inactivated protein 1 precursor

    See identical proteins and their annotated locations for NP_064674.1

    Status: PROVISIONAL

    Source sequence(s)
    BC066090
    Consensus CDS
    CCDS29786.1
    UniProtKB/Swiss-Prot
    Q9JIA1
    Related
    ENSMUSP00000143128, OTTMUSP00000017555, ENSMUST00000198518, OTTMUST00000039287
    Conserved Domains (5) summary
    pfam03736
    Location:270313
    EPTP; EPTP domain
    smart00082
    Location:173221
    LRRCT; Leucine rich repeat C-terminal domain
    pfam12799
    Location:115155
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:91151
    LRR_8; Leucine rich repeat
    sd00031
    Location:7192
    LRR_1; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000085.6 Reference GRCm38.p3 C57BL/6J

    Range
    38264782..38308939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000041.1 Alternate Mm_Celera

    Range
    39059488..39103642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)