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Litaf LPS-induced TN factor [ Mus musculus (house mouse) ]

Gene ID: 56722, updated on 28-May-2016
Official Symbol
Litafprovided by MGI
Official Full Name
LPS-induced TN factorprovided by MGI
Primary source
MGI:MGI:1929512
See related
Ensembl:ENSMUSG00000022500 Vega:OTTMUSG00000026365
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TBX1; C85531; N4WBP3; 3222402J11Rik
Orthologs
Location:
16; 16 B1-B3
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 16 NC_000082.6 (10959273..10993121, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (10959366..10993214, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene cyclin Y-like 1 pseudogene Neighboring gene RecQ mediated genome instability 2 Neighboring gene predicted gene, 21859 Neighboring gene predicted gene 4262 Neighboring gene predicted gene 10832 Neighboring gene MRT4, mRNA turnover 4 pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Lysosome, organism-specific biosystem (from KEGG)
    Lysosome, organism-specific biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
  • Lysosome, conserved biosystem (from KEGG)
    Lysosome, conserved biosystemLysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
WW domain binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
signal transducer activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
cellular response to lipopolysaccharide IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of NF-kappaB import into nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of I-kappaB kinase/NF-kappaB signaling ISO
Inferred from Sequence Orthology
more info
 
regulation of cytokine production IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
response to lipopolysaccharide IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
lysosomal membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
lysosome IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog
Names
LITAF-like protein
LPS-induced TNF-alpha factor homolog
Nedd4 WW domain-binding protein 3
estrogen-enhanced transcript protein
mEET

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_019980.2NP_064364.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

    See identical proteins and their annotated locations for NP_064364.1

    Status: VALIDATED

    Source sequence(s)
    AK076162, BX637242
    Consensus CDS
    CCDS27958.1
    UniProtKB/Swiss-Prot
    Q9JLJ0
    Related
    ENSMUSP00000023143, OTTMUSP00000032457, ENSMUST00000023143, OTTMUST00000065202
    Conserved Domains (1) summary
    pfam10601
    Location:87160
    zf-LITAF-like; LITAF-like zinc ribbon domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p3 C57BL/6J

    Range
    10959273..10993121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522427.1XP_006522490.1  

    See identical proteins and their annotated locations for XP_006522490.1

    UniProtKB/Swiss-Prot
    Q9JLJ0
    Related
    ENSMUSP00000112667, OTTMUSP00000032458, ENSMUST00000117360, OTTMUST00000065203
    Conserved Domains (1) summary
    pfam10601
    Location:87160
    zf-LITAF-like; LITAF-like zinc ribbon domain

Alternate Mm_Celera

Genomic

  1. AC_000038.1 Alternate Mm_Celera

    Range
    11588622..11622564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)