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    C10orf2 chromosome 10 open reading frame 2 [ Homo sapiens (human) ]

    Gene ID: 56652, updated on 22-May-2013
    Official Symbol
    C10orf2provided by HGNC
    Official Full Name
    chromosome 10 open reading frame 2provided by HGNC
    Primary source
    HGNC:1160
    Locus tag
    RP11-108L7.2
    See related
    Ensembl:ENSG00000107815; HPRD:05830; MIM:606075; Vega:OTTHUMG00000018917
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PEO; PEO1; SCA8; ATXN8; IOSCA; PEOA3; SANDO; TWINL; MTDPS7
    Summary
    This gene encodes a hexameric DNA helicase which unwinds short stretches of double-stranded DNA in the 5' to 3' direction and, along with mitochondrial single-stranded DNA binding protein and mtDNA polymerase gamma, is thought to play a key role in mtDNA replication. The protein localizes to the mitochondrial matrix and mitochondrial nucleoids. Mutations in this gene cause infantile onset spinocerebellar ataxia (IOSCA) and progressive external ophthalmoplegia (PEO) and are also associated with several mitochondrial depletion syndromes. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Aug 2009]
    Location :
    10q24
    Sequence :
    Chromosome: 10; NC_000010.10 (102747293..102754158)
    See C10orf2 in Epigenomics, MapViewer

    Chromosome 10 - NC_000010.10Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G Neighboring gene microRNA 608 Neighboring gene mitochondrial ribosomal protein L43 Neighboring gene leucine zipper, putative tumor suppressor 2 Neighboring gene PDZ domain containing 7 Neighboring gene sideroflexin 3

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    C10orf2-Related Mitochondrial DNA Depletion Syndrome, Hepatocerebral Form

    Summary from GeneReviews: Infantile-Onset Spinocerebellar Ataxia Go to GeneReviews

    Disease Characteristics
    Infantile-onset spinocerebellar ataxia (IOSCA) is a severe, progressive neurodegenerative disorder characterized by normal development until age one year, followed by onset of ataxia, muscle hypotonia, loss of deep-tendon reflexes, and athetosis. Ophthalmoplegia and sensorineural deafness develop by age seven years. By adolescence affected individuals are profoundly deaf and no longer ambulatory; sensory axonal neuropathy, optic atrophy, autonomic nervous system dysfunction, and hypergonadotrophic hypogonadism in females become evident. Epilepsy can develop into a serious and often fatal encephalopathy: myoclonic jerks or focal clonic seizures that progress to epilepsia partialis continua followed by status epilepticus with loss of consciousness.
    Diagnosis Testing
    The diagnosis is based on clinical findings and can be confirmed by the presence of disease-causing mutations in C10orf2 (previously PEO1), the only gene known to be associated with IOSCA. Such testing is available clinically.
    Genetic Counseling
    IOSCA is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal diagnosis for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References

    Summary from GeneReviews: DGUOK-Related Mitochondrial DNA Depletion Syndrome, Hepatocerebral Form Go to GeneReviews

    Disease Characteristics
    The two forms of deoxyguanosine kinase (DGUOK) deficiency are a hepatocerebral mitochondrial DNA depletion syndrome (multisystem disease in neonates) and isolated hepatic disease later in infancy or childhood. The majority of affected individuals have the multisystem illness with hepatic disease (cholestasis) and neurologic dysfunction evident within weeks of birth. They subsequently manifest severe hypotonia, developmental regression, and typical rotary nystagmus that evolves into opsoclonus. Those with isolated liver disease may also have renal involvement and some later develop mild hypotonia. Progressive hepatic disease is the most common cause of death in both forms.
    Diagnosis Testing
    Reduced mtDNA copy number in liver or muscle can be used to confirm mtDNA depletion. Molecular genetic testing of DGUOK is necessary to establish the specific diagnosis of DGUOK deficiency.
    Genetic Counseling
    DGUOK deficiency is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References

    Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis

    Summary from GeneReviews: POLG-Related Disorders Go to GeneReviews

    Disease Characteristics
    POLG-related disorders comprise a continuum of overlapping phenotypes that were clinically defined long before their molecular basis was known. These phenotypes exemplify the diversity that can result from mutations in a given gene. Most affected individuals have some, but not all, of the features of a given phenotype; nonetheless, the following nomenclature can assist the clinician in diagnosis and management. Onset of the POLG-related disorders ranges from early childhood to late adulthood. Alpers-Huttenlocher syndrome (AHS), one of the most severe phenotypes, is characterized by childhood-onset progressive and ultimately severe encephalopathy with intractable epilepsy and hepatic failure. Childhood myocerebrohepatopathy spectrum (MCHS) presents between the first few months of life up to about age three years with developmental delay or dementia, lactic acidosis, and a myopathy with failure to thrive. Other findings can include liver failure, renal tubular acidosis, pancreatitis, cyclic vomiting, and hearing loss. Myoclonic epilepsy myopathy sensory ataxia (MEMSA) now describes the spectrum of disorders with epilepsy, myopathy, and ataxia without ophthalmoplegia. MEMSA now includes the disorders previously described as spinocerebellar ataxia with epilepsy (SCAE). The ataxia neuropathy spectrum (ANS) includes the phenotypes previously referred to as mitochondrial recessive ataxia syndrome (MIRAS) and sensory ataxia neuropathy dysarthria and ophthalmoplegia (SANDO). About 90% of persons in the ANS have ataxia and neuropathy as core features. Approximately two thirds develop seizures and almost one half develop ophthalmoplegia; clinical myopathy is rare. Autosomal recessive progressive external ophthalmoplegia (arPEO) is characterized by progressive weakness of the extraocular eye muscles resulting in ptosis and ophthalmoparesis (or paresis of the extraocular muscles) without associated systemic involvement; however, caution is advised because many individuals with apparently isolated arPEO at the onset develop other manifestations of POLG-related disorders over years or decades. Of note, in the ANS spectrum the neuropathy commonly precedes the onset of PEO by years to decades. Autosomal dominant progressive external ophthalmoplegia (adPEO) typically includes a generalized myopathy and often variable degrees of sensorineural hearing loss, axonal neuropathy, ataxia, depression, Parkinsonism, hypogonadism, and cataracts (in what has been called "chronic progressive external ophthalmoplegia plus," or "CPEO+").
    Diagnosis Testing
    Establishing the diagnosis of a POLG-related disorder relies on clinical findings and identification of two disease-causing POLG mutations for all phenotypes except adPEO, for which identification of one disease-causing POLG mutation is diagnostic. POLG molecular genetic testing is available on a clinical basis.
    Genetic Counseling
    The POLG-related disorders in the spectrum of AHS, MCHS, MEMSA, ANS, and arPEO are inherited in an autosomal recessive manner. Autosomal dominant PEO (adPEO) is inherited in an autosomal dominant manner. For autosomal recessive phenotypes: heterozygotes (carriers) are generally believed to be asymptomatic; the offspring of carrier parents have a 25% chance of being affected, a 50% chance of being carriers, and a 25% chance of being unaffected and not carriers; carrier testing for at-risk family members is possible if the disease-causing mutations in the family are known. For the autosomal dominant phenotype: most affected individuals have an affected parent; each child of an affected individual has a 50% chance of inheriting the mutation. For pregnancies at increased risk for all phenotypes, prenatal diagnosis is possible if the disease-causing mutation(s) in the family are known.
    References

    Spinocerebellar ataxia, infantile-onset

    Summary from GeneReviews: Infantile-Onset Spinocerebellar Ataxia Go to GeneReviews

    Disease Characteristics
    Infantile-onset spinocerebellar ataxia (IOSCA) is a severe, progressive neurodegenerative disorder characterized by normal development until age one year, followed by onset of ataxia, muscle hypotonia, loss of deep-tendon reflexes, and athetosis. Ophthalmoplegia and sensorineural deafness develop by age seven years. By adolescence affected individuals are profoundly deaf and no longer ambulatory; sensory axonal neuropathy, optic atrophy, autonomic nervous system dysfunction, and hypergonadotrophic hypogonadism in females become evident. Epilepsy can develop into a serious and often fatal encephalopathy: myoclonic jerks or focal clonic seizures that progress to epilepsia partialis continua followed by status epilepticus with loss of consciousness.
    Diagnosis Testing
    The diagnosis is based on clinical findings and can be confirmed by the presence of disease-causing mutations in C10orf2 (previously PEO1), the only gene known to be associated with IOSCA. Such testing is available clinically.
    Genetic Counseling
    IOSCA is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk relatives and prenatal diagnosis for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q96RR1 Q9H8T0 AKTIP    HPRD  PubMed  
    Q96RR1 O15198 SMAD9    HPRD  PubMed  
    BioGRID:121166 BioGRID:122157 AKTIP    BioGRID  PubMed Two-hybrid 
    BioGRID:121166 BioGRID:109622 ICT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:121166 BioGRID:110268 SMAD9    BioGRID  PubMed Two-hybrid 
    BioGRID:121166 BioGRID:114397 SQSTM1    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • FLJ21832

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    5'-3' DNA helicase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    protease binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA unwinding involved in replication IEA
    Inferred from Electronic Annotation
    more info
     
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial DNA replication IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitochondrial DNA replication NAS
    Non-traceable Author Statement
    more info
    PubMed 
    protein hexamerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein homooligomerization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription from mitochondrial promoter IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrial nucleoid IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    twinkle protein, mitochondrial
    Names
    twinkle protein, mitochondrial
    ataxin 8
    mitochondrial twinkle protein
    T7-like mitochondrial DNA helicase
    progressive external ophthalmoplegia 1 protein
    T7 gp4-like protein with intramitochondrial nucleoid localization
    T7 helicase-related protein with intramitochondrial nucleoid localization
    NP_001157284.1
    NP_001157285.1
    NP_001157286.1
    NP_068602.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012624.1 RefSeqGene

      Range
      5001..11866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001163812.1NP_001157284.1  twinkle protein, mitochondrial isoform B

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region which introduces a novel stop codon, compared to variant 1. The encoded protein (isoform B; also known as Twinky) has a shorter and distinct C-terminus, which lacks a C-terminal domain required for hexamer formation, compared to isoform A.
      Source sequence(s)
      AF292005, AK025485, BC013349, CB112401, DB090322
      Consensus CDS
      CCDS53570.1
      UniProtKB/Swiss-Prot
      Q96RR1
      UniProtKB/TrEMBL
      Q9H6V3
      Related
      ENSP00000359248, OTTHUMP00000020297, ENST00000370228, OTTHUMT00000049887
      Conserved Domains (2) summary
      pfam13481
      Location:394564
      Blast Score: 210
      AAA_25; AAA domain
      cl09099
      Location:374580
      Blast Score: 666
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    2. NM_001163813.1NP_001157285.1  twinkle protein, mitochondrial isoform C

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate splice site in exon 1 that results in the use of an in-frame downstream start codon, compared to variant 1. The encoded protein (isoform C) lacks most of the N-terminus, which contains a mitochondrial targeting sequence and probable ssDNA binding domain, compared to isoform A.
      Source sequence(s)
      AK025485, BQ643363, CB112401
      UniProtKB/TrEMBL
      Q9H6V3
      Conserved Domains (2) summary
      pfam13481
      Location:6110
      Blast Score: 135
      AAA_25; AAA domain
      cl09099
      Location:1178
      Blast Score: 530
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    3. NM_001163814.1NP_001157286.1  twinkle protein, mitochondrial isoform D

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) has multiple splice site differences, compared to variant 1. The encoded protein (isoform D) lacks most of the N-terminus, which contains a mitochondrial targeting sequence and probable ssDNA binding domain, and has a shorter and distinct C-terminus, which lacks a C-terminal domain required for hexamer formation, compared to isoform A.
      Source sequence(s)
      AK025485, AL133215, CB112401
      UniProtKB/TrEMBL
      Q9H6V3
      Conserved Domains (2) summary
      pfam13481
      Location:6110
      Blast Score: 131
      AAA_25; AAA domain
      cl09099
      Location:1126
      Blast Score: 391
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    4. NM_021830.4NP_068602.2  twinkle protein, mitochondrial isoform A

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (A; also known as Twinkle).
      Source sequence(s)
      AF292004, AK025485, CB112401, DB090322
      Consensus CDS
      CCDS7506.1
      UniProtKB/TrEMBL
      E5KSY5
      UniProtKB/Swiss-Prot
      Q96RR1
      UniProtKB/TrEMBL
      Q9H6V3
      Related
      ENSP00000309595, OTTHUMP00000020296, ENST00000311916, OTTHUMT00000049886
      Conserved Domains (2) summary
      cd01122
      Location:374632
      Blast Score: 799
      GP4d_helicase; GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
      pfam13481
      Location:394564
      Blast Score: 214
      AAA_25; AAA domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000010.10 Reference GRCh37.p10 Primary Assembly

      Range
      102747293..102754158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000142.1 Alternate HuRef

      Range
      96376620..96383636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018921.1 Alternate CHM1_1.0

      Range
      103108329..103115279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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