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    INPP5E inositol polyphosphate-5-phosphatase, 72 kDa [ Homo sapiens (human) ]

    Gene ID: 56623, updated on 22-May-2013
    Official Symbol
    INPP5Eprovided by HGNC
    Official Full Name
    inositol polyphosphate-5-phosphatase, 72 kDaprovided by HGNC
    Primary source
    HGNC:21474
    See related
    Ensembl:ENSG00000148384; HPRD:17151; MIM:613037; Vega:OTTHUMG00000020927
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CPD4; CORS1; JBTS1; MORMS; PPI5PIV
    Summary
    The protein encoded by this gene is an inositol 1,4,5-trisphosphate (InsP3) 5-phosphatase. InsP3 5-phosphatases hydrolyze Ins(1,4,5)P3, which mobilizes intracellular calcium and acts as a second messenger mediating cell responses to various stimulation. Studies of the mouse counterpart suggest that this protein may hydrolyze phosphatidylinositol 3,4,5-trisphosphate and phosphatidylinositol 3,5-bisphosphate on the cytoplasmic Golgi membrane and thereby regulate Golgi-vesicular trafficking. Mutations in this gene cause Joubert syndrome; a clinically and genetically heterogenous group of disorders characterized by midbrain-hindbrain malformation and various associated ciliopathies that include retinal dystrophy, nephronophthisis, liver fibrosis and polydactyly.[provided by RefSeq, Feb 2011]
    Location :
    9q34.3
    Sequence :
    Chromosome: 9; NC_000009.11 (139323067..139334256, complement)
    See INPP5E in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene serologically defined colon cancer antigen 3 Neighboring gene peptidase (mitochondrial processing) alpha Neighboring gene SEC16 homolog A (S. cerevisiae) Neighboring gene chromosome 9 open reading frame 163

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Joubert syndrome 1

    Summary from GeneReviews: Joubert Syndrome and Related Disorders Go to GeneReviews

    Disease Characteristics
    Classic Joubert syndrome is characterized by three primary findings: A distinctive cerebellar and brain stem malformation called the molar tooth sign (MTS) . Hypotonia. Developmental delays . Often these findings are accompanied by episodic tachypnea or apnea and/or atypical eye movements. In general, the breathing abnormalities improve with age, truncal ataxia develops over time, and acquisition of gross motor milestones is delayed. Cognitive abilities are variable, ranging from severe intellectual disability to normal. The designation Joubert syndrome and related disorders (JSRD) is used to describe individuals with JS who have additional findings including retinal dystrophy, renal disease, ocular colobomas, occipital encephalocele, hepatic fibrosis, polydactyly, oral hamartomas, and endocrine abnormalities. Both intra- and interfamilial variation are seen.
    Diagnosis Testing
    The diagnosis of JSRD is based on the presence of characteristic clinical features and magnetic resonance images (MRI) through the junction of the midbrain and pons (isthmus region) that resemble a molar tooth. To date mutations in one of the following 18 genes are identified in about 50% of individuals with a JSRD: NPHP1, CEP290, AHI1, TMEM67 (MKS3), RPGRIP1L, CC2D2A, ARL13B, INPP5E, OFD1, TMEM216, KIF7, TCTN1, TCTN2, TMEM237, CEP41, TMEM138, C5orf42, and TTC21B; the other genes in which mutations are causative are unknown. Molecular genetic testing is clinically available for most of the known genes.
    Genetic Counseling
    JSRDs are predominantly inherited in an autosomal recessive manner. JSRD caused by mutation of OFD1 is inherited in an X-linked manner. Digenic inheritance has been reported. For autosomal recessive inheritance: at conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations have been identified in the family. For pregnancies at known increased risk for Joubert syndrome prenatal diagnosis by ultrasound examination with or without fetal MRI has been successful.
    References
    Protein Gene Interaction Pubs
    Gag, Pr55 gag Overexpression of phosphoinositide 5-phosphatase IV, an enzyme that depletes cellular PI(4,5)P2, severely reduces HIV-1 Gag virus production by retargeting Gag to late endosomes instead of the plasma membrane PubMed
    gag The chimeric HIV-1 Gag, in which MA is replaced with HTLV-1 MA, is less sensitive to 5ptaseIV overexpression compared to the wild type Gag, suggesting MA plays an important role of interaction between Gag and PI(4,5)P2 PubMed
    gag The 74LR mutation in Gag increases virus infectivity and compensates for the inefficient virus release in T cells expressing polyphosphoinositide 5-phosphatase IV PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    Q9NRR6 P61981 YWHAG    HPRD  PubMed  
    BioGRID:121159 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • MGC117201

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    inositol-polyphosphate 5-phosphatase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    inositol phosphate dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol biosynthetic process TAS
    Traceable Author Statement
    more info
     
    phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid metabolic process TAS
    Traceable Author Statement
    more info
     
    small molecule metabolic process TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cilium axoneme IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    72 kDa inositol polyphosphate 5-phosphatase
    Names
    72 kDa inositol polyphosphate 5-phosphatase
    phosphatidylinositol 4,5-bisphosphate 5-phosphatase
    phosphatidylinositol-4,5-bisphosphate 5-phosphatase
    phosphatidylinositol (4,5) bisphosphate 5-phosphatase
    phosphatidylinositol polyphosphate 5-phosphatase type IV
    NP_063945.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016126.1 RefSeqGene

      Range
      5001..16190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_019892.4NP_063945.2  72 kDa inositol polyphosphate 5-phosphatase

      Status: REVIEWED

      Source sequence(s)
      BC028032, BE044535
      Consensus CDS
      CCDS7000.1
      UniProtKB/Swiss-Prot
      Q9NRR6
      Related
      ENSP00000360777, OTTHUMP00000022575, ENST00000371712, OTTHUMT00000055058
      Conserved Domains (1) summary
      cd09095
      Location:295593
      Blast Score: 1524
      INPP5c_INPP5E-like; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Inositol polyphosphate-5-phosphatase E and related proteins.

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p10 Primary Assembly

      Range
      139323067..139334256, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      108782431..108793343, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018920.1 Alternate CHM1_1.0

      Range
      139359386..139370575, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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