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    INPP5E inositol polyphosphate-5-phosphatase, 72 kDa [ Homo sapiens ]

    Gene ID: 56623, updated on 11-May-2012

    Summary

    Official Symbol
    INPP5Eprovided by HGNC
    Official Full Name
    inositol polyphosphate-5-phosphatase, 72 kDaprovided by HGNC
    Primary source
    HGNC:21474
    See related
    Ensembl:ENSG00000148384; HPRD:17151; MIM:613037; Vega:OTTHUMG00000020927
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CPD4; CORS1; JBTS1; MORMS; PPI5PIV; MGC117201
    Summary
    The protein encoded by this gene is an inositol 1,4,5-trisphosphate (InsP3) 5-phosphatase. InsP3 5-phosphatases hydrolyze Ins(1,4,5)P3, which mobilizes intracellular calcium and acts as a second messenger mediating cell responses to various stimulation. Studies of the mouse counterpart suggest that this protein may hydrolyze phosphatidylinositol 3,4,5-trisphosphate and phosphatidylinositol 3,5-bisphosphate on the cytoplasmic Golgi membrane and thereby regulate Golgi-vesicular trafficking. Mutations in this gene cause Joubert syndrome; a clinically and genetically heterogenous group of disorders characterized by midbrain-hindbrain malformation and various associated ciliopathies that include retinal dystrophy, nephronophthisis, liver fibrosis and polydactyly.[provided by RefSeq, Feb 2011]

    Genomic context

    Location :
    9q34.3
    Sequence :
    Chromosome: 9; NC_000009.11 (139323067..139334256, complement)
    See INPP5E in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene serologically defined colon cancer antigen 3 Neighboring gene peptidase (mitochondrial processing) alpha Neighboring gene SEC16 homolog A (S. cerevisiae) Neighboring gene chromosome 9 open reading frame 163

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Joubert syndrome 1

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Joubert syndrome is characterized by a distinctive cerebellar and brainstem malformation, hypotonia, developmental delays, and either episodic hyperpnea or apnea or atypical eye movements or both. Most children with Joubert syndrome develop truncal ataxia. Delayed acquisition of gross motor milestones is common. Cognitive abilities are variable, ranging from severe mental retardation to normal. In general, the breathing abnormalities improve with age. The delineation of the phenotypic spectrum of Joubert syndrome remains unresolved, and both intra- and interfamilial variation are seen. Other features sometimes identified in Joubert syndrome include retinal dystrophy, renal disease, ocular colobomas, occipital encephalocele, hepatic fibrosis, polydactyly, oral hamartomas, and endocrine abnormalities. Approximately 10% of individuals with Joubert syndrome have abnormal collections of cerebrospinal fluid in the posterior fossa that may resemble Dandy-Walker malformation.
    Diagnosis Testing
    The diagnosis of Joubert syndrome is based on the presence of characteristic clinical features and the "molar tooth sign" on cranial magnetic resonance imaging (MRI), resulting from hypoplasia of the cerebellar vermis and accompanying brainstem abnormalities on axial imaging through the junction of the midbrain and pons (isthmus region). The resulting images resemble the section of a tooth. Four causative genes in which mutations appear to account for no more than 10% of cases of Joubert syndrome each are NPHP1, CEP290, AHI1, and TMEM67(MKS3); the other causative genes are unknown. Molecular genetic testing is clinically available for all four genes.
    Genetic Counseling
    Joubert syndrome is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the chance of his/her being a carrier is 2/3. Carrier testing for at-risk family members is available if the mutations have been identified in the proband. Prenatal diagnosis for mutations in AHI1, CEP290, TMEM67, and NPHP1 mutations is available if the mutations have been identified in the proband or carrier parents. Prenatal diagnosis using ultrasound examination with or without fetal MRI has been successful.
    References

    Mental retardation, truncal obesity, retinal dystrophy, and micropenis

    Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.

    HIV-1 protein interactions

    Protein Gene Interaction Pubs
    Pr55(Gag) gag Overexpression of phosphoinositide 5-phosphatase IV, an enzyme that depletes cellular PI(4,5)P2, severely reduces HIV-1 Gag virus production by retargeting Gag to late endosomes instead of the plasma membrane PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    Q9NRR6 P61981 YWHAG    HPRD  PubMed  
    BioGRID:121159 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    inositol-polyphosphate 5-phosphatase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatidylinositol phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of neuron projection development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    cilium axoneme IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    72 kDa inositol polyphosphate 5-phosphatase
    Names
    72 kDa inositol polyphosphate 5-phosphatase
    phosphatidylinositol 4,5-bisphosphate 5-phosphatase
    phosphatidylinositol-4,5-bisphosphate 5-phosphatase
    phosphatidylinositol (4,5) bisphosphate 5-phosphatase
    phosphatidylinositol polyphosphate 5-phosphatase type IV
    NP_063945.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016126.1 RefSeqGene

      Range
      5001..16190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_019892.4NP_063945.2  72 kDa inositol polyphosphate 5-phosphatase

      Status: REVIEWED

      Source sequence(s)
      BC028032, BE044535
      Consensus CDS
      CCDS7000.1
      UniProtKB/Swiss-Prot
      Q9NRR6
      Related
      ENSP00000360777, OTTHUMP00000022575, ENST00000371712, OTTHUMT00000055058
      Conserved Domains (1) summary
      cd09095
      Location:295593
      Blast Score: 1524
      INPP5c_INPP5E-like; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of Inositol polyphosphate-5-phosphatase E and related proteins.

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      139323067..139334256, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      108782431..108793343, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AL592301.14 CAI13947.1
    genomic CH471090.1 EAW88233.1
      EAW88234.1
      EAW88235.1
    mRNA AF187891.1 AAF81404.1
    mRNA AL832846.1 None
    mRNA BC028032.1 AAH28032.1
    mRNA BC110356.1 AAI10357.1
    mRNA BE044535.1 None
    mRNA BE314630.1 None
    mRNA U45974.1 AAB03215.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2YD81 GenPept UniProtKB/TrEMBL:Q2YD81
    Q9NRR6.2 GenPept UniProtKB/Swiss-Prot:Q9NRR6

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