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ccdc30 coiled-coil domain containing 30 [ Danio rerio (zebrafish) ]

Gene ID: 563478, updated on 27-Mar-2024

Summary

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Official Symbol
ccdc30provided by ZNC
Official Full Name
coiled-coil domain containing 30provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-667
See related
Ensembl:ENSDARG00000056961 AllianceGenome:ZFIN:ZDB-GENE-130530-667
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human CCDC30 (coiled-coil domain containing 30). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
29
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (20705844..20731908)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (20779508..20803819)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 3, like Neighboring gene ubiquitin specific peptidase 21 Neighboring gene zinc finger protein 362b Neighboring gene si:ch211-112c15.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 30
Names
zmp:0000000664

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    20705844..20731908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_686840.8 → XP_691932.5  coiled-coil domain-containing protein 30 isoform X1

    See identical proteins and their annotated locations for XP_691932.5

    UniProtKB/TrEMBL
    A0A8M2B955, E7FFF9
    Conserved Domains (2) summary
    TIGR02168
    Location:138 → 966
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15742
    Location:731 → 1119
    DUF4686; Domain of unknown function (DUF4686)

  2. XM_021469943.1 → XP_021325618.1  coiled-coil domain-containing protein 30 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PFE4
    Conserved Domains (2) summary
    pfam15742
    Location:731 → 1119
    DUF4686; Domain of unknown function (DUF4686)
    cl25732
    Location:138 → 966
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_005162133.4 → XP_005162190.1  coiled-coil domain-containing protein 30 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B914
    Conserved Domains (2) summary
    TIGR02168
    Location:138 → 966
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15742
    Location:731 → 1119
    DUF4686; Domain of unknown function (DUF4686)

  4. XM_005162131.4 → XP_005162188.1  coiled-coil domain-containing protein 30 isoform X1

    See identical proteins and their annotated locations for XP_005162188.1

    UniProtKB/TrEMBL
    A0A8M2B955, E7FFF9
    Related
    ENSDARP00000073993.3, ENSDART00000079538.4
    Conserved Domains (2) summary
    TIGR02168
    Location:138 → 966
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15742
    Location:731 → 1119
    DUF4686; Domain of unknown function (DUF4686)

  5. XM_005162134.4 → XP_005162191.1  coiled-coil domain-containing protein 30 isoform X4

    UniProtKB/TrEMBL
    A0A8M2B9A1
    Conserved Domains (2) summary
    TIGR02168
    Location:139 → 941
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam15742
    Location:706 → 1094
    DUF4686; Domain of unknown function (DUF4686)
Nucleotide Protein
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