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    PRPH peripherin [ Homo sapiens (human) ]

    Gene ID: 5630, updated on 5-May-2013
    Official Symbol
    PRPHprovided by HGNC
    Official Full Name
    peripherinprovided by HGNC
    Primary source
    HGNC:9461
    See related
    HPRD:01365; MIM:170710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NEF4; PRPH1
    Summary
    This gene encodes a cytoskeletal protein found in neurons of the peripheral nervous system. The encoded protein is a type III intermediate filament protein with homology to other cytoskeletal proteins such as desmin, and is a different protein that the peripherin found in photoreceptors. Mutations in this gene have been associated with susceptibility to amyotrophic lateral sclerosis. [provided by RefSeq, Jul 2008]
    Location :
    12q12-q13
    Sequence :
    Chromosome: 12; NC_000012.11 (49688909..49692481)
    See PRPH in Epigenomics, MapViewer

    Chromosome 12 - NC_000012.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100293962 Neighboring gene tubulin, alpha 1c Neighboring gene trophinin associated protein Neighboring gene complement component 1, q subcomponent-like 4

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Amyotrophic lateral sclerosis type 1

    Summary from GeneReviews: Amyotrophic Lateral Sclerosis Overview Go to GeneReviews

    Disease Characteristics
    Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease involving both upper motor neurons (UMN) and lower motor neurons (LMN). UMN signs include hyperreflexia, extensor plantar response, increased muscle tone, and weakness in a topographic representation. LMN signs include weakness, muscle wasting, hyporeflexia, muscle cramps, and fasciculations. Initial presentation varies. Affected individuals typically present with either asymmetric focal weakness of the extremities (stumbling or poor handgrip) or bulbar findings (dysarthria, dysphagia). Other findings may include muscle fasciculations, muscle cramps, and labile affect, but not necessarily mood. Regardless of initial symptoms, atrophy and weakness eventually affect other muscles. The mean age of onset is 56 years in individuals with no known family history and 46 years in individuals with more than one affected family member (familial ALS or FALS). Average disease duration is about three years, but it can vary significantly. Death usually results from compromise of the respiratory muscles.
    Diagnosis Testing
    The diagnosis of ALS is based on clinical features, electrodiagnostic testing, and exclusion of other health conditions with related symptoms. Molecular genetic testing, available in clinical laboratories for several genes associated with ALS, plays a prominent role in diagnosis of the genetic subtype and genetic counseling.
    Genetic Counseling
    Amyotrophic lateral sclerosis can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P41219 P19012 KRT15    HPRD  PubMed  
    P41219 P20700 LMNB1    HPRD  PubMed  
    P41219 Q9Y4I1 MYO5A    HPRD  PubMed  
    P41219 P23942 PRPH2    HPRD  PubMed  
    BioGRID:111614 BioGRID:107263 CALU    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:107435 CDH2    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:114030 CUL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111614 BioGRID:108964 GJA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111614 BioGRID:109433 HNRNPU    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:109822 ILF3    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:110064 KRT15    BioGRID  PubMed Two-hybrid 
    BioGRID:111614 BioGRID:110622 MTHFD1    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:110803 NDUFS4    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:118976 NENF    BioGRID  PubMed Co-fractionation 
    BioGRID:111614 BioGRID:111513 PPP2R2B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111614 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:111614 BioGRID:113272 VIM    BioGRID  PubMed Two-hybrid 
    • Amyotrophic lateral sclerosis (ALS), organism-specific biosystem (from KEGG)
      Amyotrophic lateral sclerosis (ALS), organism-specific biosystemAmyotrophic lateral sclerosis (ALS) is a progressive, lethal, degenerative disorder of motor neurons. The hallmark of this disease is the selective death of motor neurons in the brain and spinal cord...
    • Amyotrophic lateral sclerosis (ALS), conserved biosystem (from KEGG)
      Amyotrophic lateral sclerosis (ALS), conserved biosystemAmyotrophic lateral sclerosis (ALS) is a progressive, lethal, degenerative disorder of motor neurons. The hallmark of this disease is the selective death of motor neurons in the brain and spinal cord...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    C-fiber IEA
    Inferred from Electronic Annotation
    more info
     
    intermediate filament TAS
    Traceable Author Statement
    more info
    PubMed 
    neurofilament IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor outer segment membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    peripherin
    Names
    peripherin
    neurofilament 4 (57kD)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008354.1 RefSeqGene

      Range
      5001..8573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_006262.3NP_006253.2  peripherin

      Status: REVIEWED

      Source sequence(s)
      AA460760, AK125587, BC032703
      Consensus CDS
      CCDS8783.1
      UniProtKB/TrEMBL
      B3KWQ6
      UniProtKB/Swiss-Prot
      P41219
      Conserved Domains (2) summary
      pfam04732
      Location:1395
      Blast Score: 113
      Filament_head; Intermediate filament head (DNA binding) region
      pfam00038
      Location:96406
      Blast Score: 790
      Filament; Intermediate filament protein

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000012.11 Reference GRCh37.p10 Primary Assembly

      Range
      49688909..49692481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000144.1 Alternate HuRef

      Range
      46719777..46723549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018923.1 Alternate CHM1_1.0

      Range
      49521954..49525527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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