Format

Send to:

Choose Destination

clcn5a chloride channel, voltage-sensitive 5a [ Danio rerio (zebrafish) ]

Gene ID: 562336, updated on 28-Aug-2016
Official Symbol
clcn5aprovided by ZNC
Official Full Name
chloride channel, voltage-sensitive 5aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091113-15
See related
Ensembl:ENSDARG00000019693 Vega:OTTDARG00000031620
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
si:dkey-22f5.8
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCz10 (GCF_000002035.5) 21 NC_007132.6 (30625622..30656404)
103 previous assembly Zv9 (GCF_000002035.4) 21 NC_007132.5 (29425385..29456187)

Chromosome 21 - NC_007132.6Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase, alpha 1b (muscle) Neighboring gene si:dkey-22f5.9 Neighboring gene tumor necrosis factor (ligand) superfamily, member 10 like 3 Neighboring gene zgc:110224

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
chloride ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
voltage-gated chloride channel activity IBA
Inferred from Biological aspect of Ancestor
more info
 
voltage-gated chloride channel activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chloride transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
 
chloride transport IEA
Inferred from Electronic Annotation
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
endosome IBA
Inferred from Biological aspect of Ancestor
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Names
chloride channel, voltage-sensitive 5a

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007132.6 Reference GRCz10 Primary Assembly

    Range
    30625622..30656404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001920748.5XP_001920783.2  

    UniProtKB/TrEMBL
    X1WEF7
    Related
    ENSDARP00000128608, ENSDART00000154758
    Conserved Domains (4) summary
    COG0517
    Location:648794
    CBS; CBS domain [Signal transduction mechanisms]
    cd03684
    Location:129635
    ClC_3_like; ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has ...
    cd04591
    Location:658796
    CBS_pair_EriC_assoc_euk_bac; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of ...
    pfam00654
    Location:213615
    Voltage_CLC; Voltage gated chloride channel
Support Center