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slitrk1 SLIT and NTRK like family member 1 [ Danio rerio (zebrafish) ]

Gene ID: 558743, updated on 27-Mar-2024

Summary

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Gene symbol
slitrk1
Gene description
SLIT and NTRK like family member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (4545187..4550481)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003337016.1 (158724..164026, complement)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910100 Neighboring gene uncharacterized LOC101887188 Neighboring gene SLIT and NTRK-like family, member 6 Neighboring gene uncharacterized LOC101882161 Neighboring gene uncharacterized LOC103911774

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
SLIT and NTRK-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    4545187..4550481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005174629.4 → XP_005174686.1  SLIT and NTRK-like protein 1

    UniProtKB/TrEMBL
    A0A8M2BLU2
    Conserved Domains (6) summary
    smart00082
    Location:523 → 558
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:349 → 498
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:204 → 216
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:373 → 394
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:417 → 477
    LRR_8; Leucine rich repeat
    cl15307
    Location:212 → 249
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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