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    SPATA7 spermatogenesis associated 7 [ Homo sapiens (human) ]

    Gene ID: 55812, updated on 22-May-2013
    Official Symbol
    SPATA7provided by HGNC
    Official Full Name
    spermatogenesis associated 7provided by HGNC
    Primary source
    HGNC:20423
    See related
    Ensembl:ENSG00000042317; HPRD:15431; MIM:609868; Vega:OTTHUMG00000170744
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HSD3; LCA3; HSD-3.1
    Summary
    This gene, originally isolated from testis, is also expressed in retina. Mutations in this gene are associated with Leber congenital amaurosis and juvenile retinitis pigmentosa. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]
    Location :
    14q31.3
    Sequence :
    Chromosome: 14; NC_000014.8 (88851988..88904804)
    See SPATA7 in Epigenomics, MapViewer

    Chromosome 14 - NC_000014.8Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC283587 Neighboring gene potassium channel, subfamily K, member 10 Neighboring gene protein tyrosine phosphatase, non-receptor type 21 Neighboring gene zinc finger CCCH-type containing 14

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Leber congenital amaurosis 3

    Summary from GeneReviews: Leber Congenital Amaurosis Go to GeneReviews

    Disease Characteristics
    Leber congenital amaurosis (LCA), a severe dystrophy of the retina, typically becomes evident in the first year of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia, and keratoconus. Visual acuity is rarely better than 20/400. A characteristic finding is Franceschetti's oculo-digital sign, comprising eye poking, pressing, and rubbing. The appearance of the fundus is extremely variable. While the retina may initially appear normal, a pigmentary retinopathy reminiscent of retinitis pigmentosa is frequently observed later in childhood. The electroretinogram (ERG) is characteristically "nondetectable" or severely subnormal.
    Diagnosis Testing
    The diagnosis of LCA is established by clinical findings. Molecular genetic testing is clinically available for the 17genes in which mutations are known to cause LCA: GUCY2D (locus name: LCA1), RPE65 (LCA2), SPATA7 (LCA3), AIPL1 (LCA4), LCA5 (LCA5), RPGRIP1 (LCA6), CRX (LCA7), CRB1 (LCA8), NMNAT1 (LCA9), CEP290 (LCA10), IMPDH1 (LCA11), RD3 (LCA12), RDH12 (LCA13), LRAT (LCA14), TULP1 (LCA15), KCNJ13 (LCA16), and IQCB1. Together, mutations in these genes are estimated to account for over half of all LCA diagnoses. At least one other disease locus for LCA has been reported, but the gene is not known.
    Genetic Counseling
    Most often LCA is inherited in an autosomal recessive manner. At conception, each sib of an individual with recessively inherited LCA has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk may be possible if the disease-causing mutations in the family are known. Rarely, LCA is inherited in an autosomal dominant manner as a result of mutations within CRX; the possibility of autosomal dominant inheritance resulting from a de novo CRX mutation should be considered in individuals with LCA and no family history of the disease.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:120922 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 

    Markers

    Homology

    Clone Names

    • MGC102934, DKFZp686D07199

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    response to stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    spermatogenesis-associated protein 7
    Names
    spermatogenesis-associated protein 7
    spermatogenesis-associated protein HSD3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_021183.1 RefSeqGene

      Range
      5001..57817
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001040428.3NP_001035518.1  spermatogenesis-associated protein 7 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) is lacking an in-frame coding exon compared to variant 1, resulting in a shorter isoform (2) missing an internal protein segment compared to isoform 1.
      Source sequence(s)
      AF144487, BC008656, BC090875, DA568174
      Consensus CDS
      CCDS32132.1
      UniProtKB/Swiss-Prot
      Q9P0W8
      Related
      ENSP00000348991, ENST00000356583
    2. NM_018418.4NP_060888.2  spermatogenesis-associated protein 7 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AF144487, BC008656, BC090875, DA568174
      Consensus CDS
      CCDS9883.1
      UniProtKB/Swiss-Prot
      Q9P0W8
      Related
      ENSP00000377176, OTTHUMP00000244292, ENST00000393545, OTTHUMT00000410172

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000014.8 Reference GRCh37.p10 Primary Assembly

      Range
      88851988..88904804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000146.1 Alternate HuRef

      Range
      69022355..69075024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018925.1 Alternate CHM1_1.0

      Range
      69833783..69886440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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