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C1orf106 chromosome 1 open reading frame 106 [ Homo sapiens (human) ]

Gene ID: 55765, updated on 13-Jan-2015
Official Symbol
C1orf106provided by HGNC
Official Full Name
chromosome 1 open reading frame 106provided by HGNC
Primary source
HGNC:HGNC:25599
See related
Ensembl:ENSG00000163362; HPRD:07712; Vega:OTTHUMG00000035789
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
See C1orf106 in MapViewer
Location:
1q32.1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 1 NC_000001.11 (200891499..200915736)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (200860627..200884864)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L34 pseudogene 6 Neighboring gene G protein-coupled receptor 25 Neighboring gene maestro heat-like repeat family member 3, pseudogene Neighboring gene kinesin family member 21B

NHGRI GWAS Catalog

Description
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
NHGRI GWA Catalog
Genome-wide association study of ulcerative colitis identifies three new susceptibility loci, including the HNF4A region.
NHGRI GWA Catalog
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
NHGRI GWA Catalog
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
NHGRI GWA Catalog
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47.
NHGRI GWA Catalog

Markers

Homology

Clone Names

  • FLJ10901, MGC125608
Preferred Names
uncharacterized protein C1orf106
Names
uncharacterized protein C1orf106

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142569.2NP_001136041.1  uncharacterized protein C1orf106 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream translational start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
    Source sequence(s)
    AK001583, AK303885, AK316510, AW467005
    Consensus CDS
    CCDS44292.1
    UniProtKB/Swiss-Prot
    Q3KP66
    Conserved Domains (1) summary
    pfam11819
    Location:1132
    DUF3338; Domain of unknown function (DUF3338)
  2. NM_018265.3NP_060735.3  uncharacterized protein C1orf106 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC099756, AK001583, AK001763, AW467005, BP357953
    UniProtKB/Swiss-Prot
    Q3KP66
    Related
    ENSP00000356311, OTTHUMP00000033937, ENST00000367342, OTTHUMT00000087057
    Conserved Domains (1) summary
    pfam11819
    Location:100231
    DUF3338; Domain of unknown function (DUF3338)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38 Primary Assembly

    Range
    200891499..200915736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006711445.1XP_006711508.1  

    Conserved Domains (1) summary
    pfam11819
    Location:86217
    DUF3338; Domain of unknown function (DUF3338)

Alternate CHM1_1.1

Genomic

  1. NC_018912.2 Alternate CHM1_1.1

    Range
    202283317..202307556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000133.1 Alternate HuRef

    Range
    172027619..172051677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)