zbtb43 zinc finger and BTB domain containing 43 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zbtb43provided by ZNC
Official Full Name: zinc finger and BTB domain containing 43provided by ZNC
Primary source: ZFIN:ZDB-GENE-060526-378
See related: Ensembl:ENSDARG00000045983 AllianceGenome:ZFIN:ZDB-GENE-060526-378
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:rp71-14i8.2
Summary: Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB43 (zinc finger and BTB domain containing 43). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (4921090..4931266, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (4497503..4507679, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger and BTB domain-containing protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001110024.1 → NP_001103494.1 zinc finger and BTB domain-containing protein 43

See identical proteins and their annotated locations for NP_001103494.1

Status: PROVISIONAL

Source sequence(s)

BC151996

UniProtKB/TrEMBL

A7MC10

Related

ENSDARP00000067599.3, ENSDART00000067600.4

Conserved Domains (4) summary

smart00225
Location:34 → 124

BTB; Broad-Complex, Tramtrack and Bric a brac

sd00017
Location:323 → 341

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00651
Location:23 → 123

BTB; BTB/POZ domain

pfam13465
Location:361 → 384

zf-H2C2_2; Zinc-finger double domain