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    VPS35 vacuolar protein sorting 35 homolog (S. cerevisiae) [ Homo sapiens (human) ]

    Gene ID: 55737, updated on 22-May-2013
    Official Symbol
    VPS35provided by HGNC
    Official Full Name
    vacuolar protein sorting 35 homolog (S. cerevisiae)provided by HGNC
    Primary source
    HGNC:13487
    Locus tag
    TCCCTA00141
    See related
    HPRD:06085; MIM:601501
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MEM3; PARK17
    Summary
    This gene belongs to a group of vacuolar protein sorting (VPS) genes. The encoded protein is a component of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. The close structural similarity between the yeast and human proteins that make up this complex suggests a similarity in function. Expression studies in yeast and mammalian cells indicate that this protein interacts directly with VPS35, which serves as the core of the retromer complex. [provided by RefSeq, Jul 2008]
    Location :
    16q12
    Sequence :
    Chromosome: 16; NC_000016.9 (46693589..46723144, complement)
    See VPS35 in Epigenomics, MapViewer

    Chromosome 16 - NC_000016.9Genomic Context describing neighboring genes Neighboring gene SHC SH2-domain binding protein 1 Neighboring gene RAB43 pseudogene 1 Neighboring gene origin recognition complex, subunit 6 Neighboring gene myosin light chain kinase 3

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Parkinson disease 17

    Summary from GeneReviews: Parkinson Disease Overview Go to GeneReviews

    Disease Characteristics
    Parkinsonism refers to all clinical states characterized by tremor, muscle rigidity, and slowed movement (bradykinesia). Parkinson disease is the primary and most common form of parkinsonism. Psychiatric manifestations, which include depression and visual hallucinations, are common but not uniformly present. Dementia eventually occurs in at least 20% of cases. Generally, individuals with onset before age 20 years are considered to have juvenile-onset Parkinson disease, those with onset before age 50 years are classified as having early-onset Parkinson disease, and those with onset after age 50 years are considered to have late-onset Parkinson disease.
    Diagnosis Testing
    The diagnosis of Parkinson disease is based solely on the clinical findings of tremor, rigidity, and bradykinesia. A good response to levodopa and asymmetric onset of limb involvement are generally regarded as supporting diagnostic features. The cardinal pathologic feature of Parkinson disease is the loss of dopaminergic neurons in the substantia nigra with intracytoplasmic inclusions (Lewy bodies) in the remaining, intact nigral neurons. The genetic cause of some forms of Parkinson disease has been identified. Seven disease genes have been implicated. Mutations in three known genes, SNCA (PARK1), UCHL1 (PARK5), and LRRK2 (PARK8) and one mapped gene (PARK3) result in autosomal dominant Parkinson disease. Mutations in three known genes, PARK2 (PARK2), PARK7 (PARK7), and PINK1 (PARK6), result in autosomal recessive Parkinson disease. Three susceptibility genes have been identified. Molecular genetic testing is clinically available for PARK2 (the gene encoding parkin), PINK1, PARK7, SNCA, and LRRK2.
    Genetic Counseling
    Parkinson disease can be inherited in an autosomal dominant or autosomal recessive manner; however, most cases of Parkinson disease are thought to result from the effects of multiple genes as well as environmental risk factors. Genetic counseling of affected individuals and their family members must be done on a family-by-family basis. The risk to first-degree relatives of a person with Parkinson disease varies from study to study and from country to country. In families with a non-mendelian form of Parkinson disease, first-degree relatives of an affected individual are between 2.7 and 3.5 times more likely to develop Parkinson disease than individuals without a family history of Parkinson disease. Their cumulative lifetime risk of developing Parkinson disease is therefore between 3% and 7%.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q96QK1 P49286 MTNR1B    HPRD  PubMed  
    Q96QK1 Q13596 SNX1    HPRD  PubMed  
    Q96QK1 Q4G0F5 VPS26B    HPRD  PubMed  
    Q96QK1 Q9UBQ0 VPS29    HPRD  PubMed  
    BioGRID:120855 BioGRID:119564 ANKFY1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120855 BioGRID:123548 ANP32E    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:120855 BioGRID:106902 ARRB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:107011 ATP6V1C1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:117136 CORO1C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:119101 CYHR1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:120855 BioGRID:122328 FAM129B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:128984 FAM21C    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:120855 BioGRID:108621 FN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:109272 H3F3A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:109319 HDLBP    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:114593 HGS    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120855 BioGRID:109870 IRF4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:109883 ITGA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:115869 IVNS1ABP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:120036 MAGEL2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:120855 BioGRID:110333 MCC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:122734 MUL1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120855 BioGRID:115950 NUDC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:120391 OXR1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:33701 PEP8    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120855 BioGRID:123578 PPP1R14C    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:111639 PSAP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:112071 RPL24    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:112171 RYK    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:112368 SHMT2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:112526 SNX2    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:120855 BioGRID:114263 SNX3    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:120855 BioGRID:121852 SNX6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:115123 TBC1D5    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:120855 BioGRID:117420 THUMPD3    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:119978 TOLLIP    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:119634 TRMT6    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:125450 TRMT61A    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:113119 TTC4    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:115791 UBD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:115566 UBE4B    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:111908 UPF1    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:124189 USP32    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:125884 USP43    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:123941 USP48    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:120855 BioGRID:113265 VEGFA    BioGRID  PubMed Two-hybrid 
    BioGRID:120855 BioGRID:124039 VPS25    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:114930 VPS26A    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:120855 BioGRID:125215 VPS26B    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:119683 VPS29    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:120855 BioGRID:117659 VPS33B    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:120855 VPS35    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120855 BioGRID:33606 VPS35    BioGRID  PubMed Phenotypic Suppression 
    BioGRID:120855 BioGRID:119234 VPS36    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:116272 WDR5    BioGRID  PubMed Co-fractionation 
    BioGRID:120855 BioGRID:123349 ZBP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120855 BioGRID:121543 ZNF512B    BioGRID  PubMed Two-hybrid 

    Markers

    Homology

    Clone Names

    • FLJ10752, FLJ13588, FLJ20388, DKFZp434E1211, DKFZp434P1672

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde transport, endosome to Golgi NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endosome IDA
    Inferred from Direct Assay
    more info
     
    intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    vacuolar protein sorting-associated protein 35
    Names
    vacuolar protein sorting-associated protein 35
    hVPS35
    maternal-embryonic 3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029970.1 RefSeqGene

      Range
      5001..34556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_018206.4NP_060676.2  vacuolar protein sorting-associated protein 35

      Status: REVIEWED

      Source sequence(s)
      BC093036, BM971213, BQ574179, DB049686
      Consensus CDS
      CCDS10721.1
      UniProtKB/Swiss-Prot
      Q96QK1
      Conserved Domains (1) summary
      pfam03635
      Location:14754
      Blast Score: 2759
      Vps35; Vacuolar protein sorting-associated protein 35

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000016.9 Reference GRCh37.p10 Primary Assembly

      Range
      46693589..46723144, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000148.1 Alternate HuRef

      Range
      32582305..32611908, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018927.1 Alternate CHM1_1.0

      Range
      47703633..47733190, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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