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pparg peroxisome proliferator-activated receptor gamma [ Danio rerio (zebrafish) ]

Gene ID: 557037, updated on 7-May-2016
Official Symbol
ppargprovided by ZNC
Official Full Name
peroxisome proliferator-activated receptor gammaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-990415-213
See related
Ensembl:ENSDARG00000031848
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
PPAR[g]
Annotation information
Annotation category: partial on reference assembly
Orthologs
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 11 NC_007122.6 (578958..612027, complement)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (596126..629195, complement)
103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (1314..5499)

Chromosome 11 - NC_007122.6Genomic Context describing neighboring genes Neighboring gene MKRN2 opposite strand, tandem duplicate 2 Neighboring gene TSEN2 tRNA splicing endonuclease subunit Neighboring gene synapsin IIb Neighboring gene metalloproteinase inhibitor 2-like Neighboring gene TIMP metallopeptidase inhibitor 4a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Adipogenesis, organism-specific biosystem (from WikiPathways)
    Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...
  • Nuclear Receptors, organism-specific biosystem (from WikiPathways)
    Nuclear Receptors, organism-specific biosystemNuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of steroid and thyroid hormones and certain other molecules. In response, th...
  • Nuclear receptors in lipid metabolism and toxicity, organism-specific biosystem (from WikiPathways)
    Nuclear receptors in lipid metabolism and toxicity, organism-specific biosystemNuclear receptors are transcription factors that are activated upon binding to its ligands. Initially, they had been classified as classic endocrine nuclear hormone receptors and orphan receptors. Ho...
  • PPAR signaling pathway, organism-specific biosystem (from KEGG)
    PPAR signaling pathway, organism-specific biosystemPeroxisome proliferator-activated receptors (PPARs) are nuclear hormone receptors that are activated by fatty acids and their derivatives. PPAR has three subtypes (PPARalpha, beta/delta, and gamma) s...
  • PPAR signaling pathway, conserved biosystem (from KEGG)
    PPAR signaling pathway, conserved biosystemPeroxisome proliferator-activated receptors (PPARs) are nuclear hormone receptors that are activated by fatty acids and their derivatives. PPAR has three subtypes (PPARalpha, beta/delta, and gamma) s...

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
steroid hormone mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
triglyceride homeostasis IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
peroxisome proliferator-activated receptor gamma
Names
ARF6
NR1C3
peroxisome proliferator activated receptor gamma

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131467.1NP_571542.1  peroxisome proliferator-activated receptor gamma

    See identical proteins and their annotated locations for NP_571542.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ839547
    UniProtKB/TrEMBL
    A6XMH6
    Related
    ENSDARP00000039949, ENSDART00000039950
    Conserved Domains (3) summary
    cd06932
    Location:253526
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:154237
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
    pfam12577
    Location:17124
    PPARgamma_N; PPAR gamma N-terminal region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007122.6 Reference GRCz10 Primary Assembly

    Range
    578958..612027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)