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LOC5568333 histone deacetylase 6 [ Aedes aegypti (yellow fever mosquito) ]

Gene ID: 5568333, updated on 23-Mar-2024

Summary

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Gene symbol
LOC5568333
Gene description
histone deacetylase 6
See related
VectorBase:AAEL021491
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes aegypti
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Also known as
AAEL001069
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Genomic context

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Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
101 current AaegL5.0 (GCF_002204515.2) 1 NC_035107.1 (28345838..28396812, complement)

Chromosome 1 - NC_035107.1Genomic Context describing neighboring genes Neighboring gene COP9 signalosome complex subunit 5 Neighboring gene probable RNA 3'-terminal phosphate cyclase-like protein Neighboring gene uncharacterized LOC110674383 Neighboring gene uncharacterized LOC5570518

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035107.1 Chromosome 1 Reference AaegL5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaegL5.0 Primary Assembly

Genomic

  1. NC_035107.1 Reference AaegL5.0 Primary Assembly

    Range
    28345838..28396812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021839256.1 → XP_021694948.1  histone deacetylase 6 isoform X1

    UniProtKB/TrEMBL
    A0A6I8TZR6, Q17MD0
    Conserved Domains (3) summary
    cd10002
    Location:102 → 440
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    pfam02148
    Location:1014 → 1076
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:523 → 872
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_021839257.1 → XP_021694949.1  histone deacetylase 6 isoform X2

    UniProtKB/TrEMBL
    A0A6I8U0P0, Q17MD0
    Conserved Domains (3) summary
    cd10002
    Location:102 → 440
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    pfam02148
    Location:1014 → 1076
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:523 → 872
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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