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LYAR Ly1 antibody reactive [ Homo sapiens (human) ]

Gene ID: 55646, updated on 8-May-2016
Official Symbol
LYARprovided by HGNC
Official Full Name
Ly1 antibody reactiveprovided by HGNC
Primary source
HGNC:HGNC:26021
See related
Ensembl:ENSG00000145220 HPRD:10064; Vega:OTTHUMG00000125477
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZLYAR; ZC2HC2
Orthologs
Location:
4p16.3
Exon count:
11
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 4 NC_000004.12 (4267701..4290169, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (4269428..4291896, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene otopetrin 1 Neighboring gene transmembrane protein 128 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene uncharacterized LOC105374360

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ20425

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
cell growth-regulating nucleolar protein
Names
Ly1 antibody reactive homolog

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145725.1NP_001139197.1  cell growth-regulating nucleolar protein

    See identical proteins and their annotated locations for NP_001139197.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL136750, BQ775341
    Consensus CDS
    CCDS3374.1
    UniProtKB/Swiss-Prot
    Q9NX58
    Related
    ENSP00000397367, ENST00000452476
    Conserved Domains (1) summary
    pfam08790
    Location:3158
    zf-LYAR; LYAR-type C2HC zinc finger
  2. NM_017816.2NP_060286.1  cell growth-regulating nucleolar protein

    See identical proteins and their annotated locations for NP_060286.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AI418609, AK000432, BQ775341
    Consensus CDS
    CCDS3374.1
    UniProtKB/Swiss-Prot
    Q9NX58
    Related
    ENSP00000345917, OTTHUMP00000155128, ENST00000343470, OTTHUMT00000246800
    Conserved Domains (1) summary
    pfam08790
    Location:3158
    zf-LYAR; LYAR-type C2HC zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p2 Primary Assembly

    Range
    4267701..4290169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011513506.1XP_011511808.1  

    See identical proteins and their annotated locations for XP_011511808.1

    UniProtKB/Swiss-Prot
    Q9NX58
    Conserved Domains (1) summary
    pfam08790
    Location:3158
    zf-LYAR; LYAR-type C2HC zinc finger
  2. XM_011513505.1XP_011511807.1  

    See identical proteins and their annotated locations for XP_011511807.1

    UniProtKB/Swiss-Prot
    Q9NX58
    Conserved Domains (1) summary
    pfam08790
    Location:3158
    zf-LYAR; LYAR-type C2HC zinc finger

Alternate CHM1_1.1

Genomic

  1. NC_018915.2 Alternate CHM1_1.1

    Range
    4267309..4289782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)