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    NOP10 NOP10 ribonucleoprotein [ Homo sapiens (human) ]

    Gene ID: 55505, updated on 5-May-2013
    Official Symbol
    NOP10provided by HGNC
    Official Full Name
    NOP10 ribonucleoproteinprovided by HGNC
    Primary source
    HGNC:14378
    See related
    Ensembl:ENSG00000182117; HPRD:07571; MIM:606471; Vega:OTTHUMG00000129440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DKCB1; NOLA3; NOP10P
    Summary
    This gene is a member of the H/ACA snoRNPs (small nucleolar ribonucleoproteins) gene family. snoRNPs are involved in various aspects of rRNA processing and modification and have been classified into two families: C/D and H/ACA. The H/ACA snoRNPs also include the DKC1, NOLA1 and NOLA2 proteins. These four H/ACA snoRNP proteins localize to the dense fibrillar components of nucleoli and to coiled (Cajal) bodies in the nucleus. Both 18S rRNA production and rRNA pseudouridylation are impaired if any one of the four proteins is depleted. The four H/ACA snoRNP proteins are also components of the telomerase complex. This gene encodes a protein related to Saccharomyces cerevisiae Nop10p. [provided by RefSeq, Jul 2008]
    Location :
    15q14-q15
    Sequence :
    Chromosome: 15; NC_000015.9 (34633917..34635362, complement)
    See NOP10 in Epigenomics, MapViewer

    Chromosome 15 - NC_000015.9Genomic Context describing neighboring genes Neighboring gene katanin p80 subunit B-like 1 Neighboring gene solute carrier family 12 (potassium/chloride transporters), member 6 Neighboring gene ER membrane protein complex subunit 4 Neighboring gene NUT midline carcinoma, family member 1 Neighboring gene lysophosphatidylcholine acyltransferase 4

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Dyskeratosis congenita autosomal recessive

    Summary from GeneReviews: Dyskeratosis Congenita Go to GeneReviews

    Disease Characteristics
    Dyskeratosis congenita (DC), a telomere biology disorder, is characterized by a classic triad of dysplastic nails, lacy reticular pigmentation of the upper chest and/or neck, and oral leukoplakia. However, the classic triad may not be present in all individuals. People with DC are at increased risk for progressive bone marrow failure (BMF), myelodysplastic syndrome (MDS) or acute myelogenous leukemia (AML), solid tumors (usually squamous cell carcinoma of the head/neck or anogenital cancer), and pulmonary fibrosis. Other findings can include: abnormal pigmentation changes not restricted to the upper chest and neck, eye abnormalities (epiphora, blepharitis, sparse eyelashes, ectropion, entropion, trichiasis), and dental abnormalities (caries, periodontal disease, taurodauntism). Although most persons with DC have normal psychomotor development and normal neurologic function, significant developmental delay is present in the two variants in which additional findings include cerebellar hypoplasia (Hoyeraal Hreidarsson syndrome) and bilateral exudative retinopathy and intracranial calcifications (Revesz syndrome). Onset and progression of manifestations of DC vary: at the mild end of the spectrum are those who have only minimal physical findings with normal bone marrow function, and at the severe end are those who have the diagnostic triad and early-onset BMF.
    Diagnosis Testing
    All individuals with DC have abnormally short telomeres for their age, as determined by multicolor flow cytometry fluorescence in situ hybridization (flow-FISH) on white blood cell (WBC) subsets. To date, CTC1, DKC1, TERC, TERT, TINF2, NHP2, NOP10, and WRAP53 are the genes in which mutations are known to cause DC and result in very short telomeres. Mutations in one of these eight genes have been identified in approximately half of individuals who meet clinical diagnostic criteria for DC. Molecular genetic testing is available clinically for seven of these genes.
    Genetic Counseling
    The mode of inheritance of DC varies by gene: DKC1 (X-linked), TERC and TINF2 (autosomal dominant), TERT (autosomal dominant or autosomal recessive), CTC1, WRAP53, NHP2, and NOP10 (autosomal recessive). Genetic counseling regarding risk to family members depends on accurate diagnosis, determination of the mode of inheritance in each family, and results of molecular genetic testing. Prenatal testing for pregnancies at increased risk may be possible for DC if the disease-causing mutation(s) in the family is/are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:120685 BioGRID:106901 ARRB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120685 BioGRID:106902 ARRB2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120685 BioGRID:108080 DKC1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120685 BioGRID:124938 NAF1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:120685 BioGRID:203509 Nhp2l1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120685 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:120685 BioGRID:121649 WDR48    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • MGC70651

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    pseudouridine synthesis NAS
    Non-traceable Author Statement
    more info
    PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Cajal body IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    small nucleolar ribonucleoprotein complex TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    H/ACA ribonucleoprotein complex subunit 3
    Names
    H/ACA ribonucleoprotein complex subunit 3
    nucleolar protein 10
    snoRNP protein NOP10
    homolog of yeast Nop10p
    NOP10 ribonucleoprotein homolog
    nucleolar protein family A member 3
    nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011562.1 RefSeqGene

      Range
      5001..6446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_345

    mRNA and Protein(s)

    1. NM_018648.3NP_061118.1  H/ACA ribonucleoprotein complex subunit 3

      Status: REVIEWED

      Source sequence(s)
      BM554889, BQ218536
      Consensus CDS
      CCDS10037.1
      UniProtKB/Swiss-Prot
      Q9NPE3
      Related
      ENSP00000332198, OTTHUMP00000159812, ENST00000328848, OTTHUMT00000251602
      Conserved Domains (1) summary
      pfam04135
      Location:352
      Blast Score: 182
      Nop10p; Nucleolar RNA-binding protein, Nop10p family

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000015.9 Reference GRCh37.p10 Primary Assembly

      Range
      34633917..34635362, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000147.1 Alternate HuRef

      Range
      11497261..11498790, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018926.1 Alternate CHM1_1.0

      Range
      14700899..14702344, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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