Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

col4a1 collagen, type IV, alpha 1 [ Danio rerio (zebrafish) ]

Gene ID: 554269, updated on 3-Jun-2014
Official Symbol
col4a1provided by ZNC
Official Full Name
collagen, type IV, alpha 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-081105-114
See related
Ensembl:ENSDARG00000055009
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
col4a5; fj65e07; im:7157877; wu:fj65e07; si:ch211-174g17.1
See col4a1 in MapViewer
Location:
chromosome: 9
Exon count :
52
Annotation release Status Assembly Chr Location
103 current Zv9 (GCF_000002035.4) 9 NC_007120.5 (8672802..8772216, complement)

Chromosome 9 - NC_007120.5Genomic Context describing neighboring genes Neighboring gene insulin receptor substrate 2 Neighboring gene retrotransposon-derived protein PEG10-like Neighboring gene uncharacterized LOC100535531 Neighboring gene collagen, type IV, alpha 2

Genomic Sequence:
NC_007120.5 chromosome 9 reference Zv9 Primary Assembly

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • ECM-receptor interaction, organism-specific biosystem (from KEGG)
    ECM-receptor interaction, organism-specific biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
  • ECM-receptor interaction, conserved biosystem (from KEGG)
    ECM-receptor interaction, conserved biosystemThe extracellular matrix (ECM) consists of a complex mixture of structural and functional macromolecules and serves an important role in tissue and organ morphogenesis and in the maintenance of cell ...
  • Focal adhesion, organism-specific biosystem (from KEGG)
    Focal adhesion, organism-specific biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
  • Focal adhesion, conserved biosystem (from KEGG)
    Focal adhesion, conserved biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
collagen trimer IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
collagen alpha-1(IV) chain
Names
collagen, type IV, alpha 1
collagen, type IV, alpha 5
type IV collagen alpha 5 chain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 103

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zv9 Primary Assembly

Genomic

  1. NC_007120.5 

    Range
    8672802..8772216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_688948.6XP_694040.5  

    Related
    ENSDARP00000111488, ENSDART00000130442
    Conserved Domains (3) summary
    smart00111
    Location:15261639
    Blast Score: 537
    C4; C-terminal tandem repeated domain in type 4 procollagens
    pfam01413
    Location:14161525
    Blast Score: 561
    C4; C-terminal tandem repeated domain in type 4 procollagen
    pfam01391
    Location:10861143
    Blast Score: 111
    Collagen; Collagen triple helix repeat (20 copies)

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...