Format

Send to:

Choose Destination

SOBP sine oculis binding protein homolog [ Homo sapiens (human) ]

Gene ID: 55084, updated on 8-May-2016
Official Symbol
SOBPprovided by HGNC
Official Full Name
sine oculis binding protein homologprovided by HGNC
Primary source
HGNC:HGNC:29256
See related
Ensembl:ENSG00000112320 HPRD:07650; MIM:613667; Vega:OTTHUMG00000015312
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
JXC1; MRAMS
Summary
The protein encoded by this gene is a nuclear zinc finger protein that is involved in development of the cochlea. Defects in this gene have also been linked to intellectual disability. [provided by RefSeq, Mar 2011]
Orthologs
Location:
6q21
Exon count:
11
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 6 NC_000006.12 (107490098..107661309)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (107811317..107982513)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene BEN domain containing 3 Neighboring gene prenyl (decaprenyl) diphosphate synthase, subunit 2 Neighboring gene ribosomal protein S24 pseudogene 12 Neighboring gene sex comb on midleg-like 4 (Drosophila) Neighboring gene SEC63 homolog, protein translocation regulator Neighboring gene ribosomal protein L23a pseudogene 50

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ10159

Gene Ontology Provided by GOA

Function Evidence Code Pubs
SUMO polymer binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cochlea development IEA
Inferred from Electronic Annotation
more info
 
cognition IMP
Inferred from Mutant Phenotype
more info
PubMed 
inner ear morphogenesis IEA
Inferred from Electronic Annotation
more info
 
locomotory behavior IEA
Inferred from Electronic Annotation
more info
 
sensory perception of sound IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
sine oculis-binding protein homolog
Names
SOBP
jackson circler protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028200.1 RefSeqGene

    Range
    5001..176197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_018013.3NP_060483.3  sine oculis-binding protein homolog

    See identical proteins and their annotated locations for NP_060483.3

    Status: REVIEWED

    Source sequence(s)
    AL096816, AL121957, BC014859, BC113966, BM684094, BX442875
    Consensus CDS
    CCDS43488.1
    UniProtKB/Swiss-Prot
    A7XYQ1
    UniProtKB/TrEMBL
    Q24K27
    Related
    ENSP00000318900, OTTHUMP00000198925, ENST00000317357, OTTHUMT00000041693
    Conserved Domains (1) summary
    pfam15279
    Location:224524
    SOBP; Sine oculis-binding protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p2 Primary Assembly

    Range
    107490098..107661309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005267042.3XP_005267099.1  

    Conserved Domains (1) summary
    pfam15279
    Location:243543
    SOBP; Sine oculis-binding protein
  2. XM_011535920.1XP_011534222.1  

    See identical proteins and their annotated locations for XP_011534222.1

    Conserved Domains (1) summary
    pfam15279
    Location:275575
    SOBP; Sine oculis-binding protein
  3. XM_005267041.3XP_005267098.1  

    See identical proteins and their annotated locations for XP_005267098.1

    Conserved Domains (1) summary
    pfam15279
    Location:275575
    SOBP; Sine oculis-binding protein
  4. XM_011535921.1XP_011534223.1  

    Conserved Domains (1) summary
    pfam15279
    Location:237537
    SOBP; Sine oculis-binding protein
  5. XM_011535922.1XP_011534224.1  

    Conserved Domains (1) summary
    pfam15279
    Location:28328
    SOBP; Sine oculis-binding protein
  6. XM_011535923.1XP_011534225.1  

    Conserved Domains (1) summary
    pfam15279
    Location:1265
    SOBP; Sine oculis-binding protein

Alternate CHM1_1.1

Genomic

  1. NC_018917.2 Alternate CHM1_1.1

    Range
    108074040..108245206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)