C7orf42 chromosome 7 open reading frame 42 [Homo sapiens] - Gene

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Summary

Official Symbol: C7orf42provided by HGNC
Official Full Name: chromosome 7 open reading frame 42provided by HGNC
Primary source: HGNC:25476
See related: Ensembl:ENSG00000106609; HPRD:08541; Vega:OTTHUMG00000129553
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: FLJ10099; FLJ13090

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Genomic context

Location :: 7q11.21

Sequence :: Chromosome: 7; NC_000007.13 (66386203..66423538)

See C7orf42 in Epigenomics, MapViewer

Chromosome 7 - NC_000007.13 Genomic Context describing neighboring genes

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Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

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Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

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Phenotypes

Review eQTL and phenotype association data in this region using PheGenI

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description
BioGRID:120386	BioGRID:113164	UBC		BioGRID	PubMed	Affinity Capture-MS

Component	Evidence Code	Pubs
integral to membrane	IEA Inferred from Electronic Annotation more info
membrane	IEA Inferred from Electronic Annotation more info

General protein information

Preferred Names: UPF0458 protein C7orf42

Names: UPF0458 protein C7orf42

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NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_017994.4 → NP_060464.1 UPF0458 protein C7orf42

Status: VALIDATED

Source sequence(s)

AC079920, AK222774, BC012562

Consensus CDS

CCDS5536.1

UniProtKB/Swiss-Prot

Q9NWD8

Related

ENSP00000340668, OTTHUMP00000159952, ENST00000341567, OTTHUMT00000251745

RefSeqs of Annotated Genomes: Build 37.3

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh37.p5 Primary Assembly

Genomic

NC_000007.13 Reference GRCh37.p5 Primary Assembly

Range

66386203..66423538

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

AC_000139.1 Alternate HuRef

Range

62569441..62606689

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CRA_TCAGchr7v2

Genomic

AC_000068.1 Alternate CRA_TCAGchr7v2

Range

65723765..65761100

Download

GenBank, FASTA, Sequence Viewer (Graphics)

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Related Sequences

Nucleotide		Protein
Heading	Accession and Version	Protein
genomic	AC073335.5 (51078..68274)	None
genomic	AC079920.6 (2000..22108)	None
genomic	CH236961.1	EAL23731.1
genomic	CH471140.1	EAX07907.1
		EAX07908.1
		EAX07909.1
mRNA	AK000961.1	BAA91444.1
mRNA	AK023152.1	None
mRNA	AK222774.1	BAD96494.1
mRNA	BC008675.1	AAH08675.1
mRNA	BC010519.1	AAH10519.1
mRNA	BC012562.1	AAH12562.1
mRNA	BC022841.1	None
mRNA	BC041764.2	AAH41764.1
other-genetic	HQ448667.1	ADQ33145.1
other-genetic	JF432588.1	ADZ15805.1