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HEATR3 HEAT repeat containing 3 [ Homo sapiens (human) ]

Gene ID: 55027, updated on 8-May-2016
Official Symbol
HEATR3provided by HGNC
Official Full Name
HEAT repeat containing 3provided by HGNC
Primary source
HGNC:HGNC:26087
See related
Ensembl:ENSG00000155393 HPRD:07945; MIM:614951
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SYO1
Orthologs
Location:
16q12.1
Exon count:
16
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 16 NC_000016.10 (50065970..50105481)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (50099881..50139392)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene regulation of nuclear pre-mRNA domain containing 1A pseudogene Neighboring gene actin gamma 1 pseudogene 16 Neighboring gene uncharacterized LOC101927250 Neighboring gene RNA, Ro-associated Y4 pseudogene 3 Neighboring gene ribosomal protein L10 pseudogene 14 Neighboring gene PAP associated domain containing 5

NHGRI GWAS Catalog

Description
Genome-wide association analyses of esophageal squamous cell carcinoma in Chinese identify multiple susceptibility loci and gene-environment interactions.
NHGRI GWA Catalog
Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14.
NHGRI GWA Catalog
Meta-analysis identifies four new loci associated with testicular germ cell tumor.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ20718
Preferred Names
HEAT repeat-containing protein 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182922.2NP_891552.1  HEAT repeat-containing protein 3

    See identical proteins and their annotated locations for NP_891552.1

    Status: PROVISIONAL

    Source sequence(s)
    AC007610, BC018730
    Consensus CDS
    CCDS10739.1
    UniProtKB/Swiss-Prot
    Q7Z4Q2
    Related
    ENSP00000299192, OTTHUMP00000164228, ENST00000299192, OTTHUMT00000256880
    Conserved Domains (1) summary
    cd13394
    Location:2673
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p2 Primary Assembly

    Range
    50065970..50105481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005256013.1XP_005256070.1  

    See identical proteins and their annotated locations for XP_005256070.1

    Conserved Domains (1) summary
    cd13394
    Location:18587
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins
  2. XM_011523189.1XP_011521491.1  

    Conserved Domains (1) summary
    cd13394
    Location:4531
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins
  3. XM_011523188.1XP_011521490.1  

    See identical proteins and their annotated locations for XP_011521490.1

    Conserved Domains (1) summary
    cd13394
    Location:1556
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins
  4. XM_005256014.2XP_005256071.1  

    Conserved Domains (1) summary
    cd13394
    Location:134442
    Syo1_like; Fungal symportin 1 (syo1) and similar proteins

Alternate CHM1_1.1

Genomic

  1. NC_018927.2 Alternate CHM1_1.1

    Range
    51507140..51546658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_017939.1: Suppressed sequence

    Description
    NM_017939.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.